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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176533 (34 seq.)
>W1711010102
LQRA01000090
Bacillota
Paenibacillus elgii [LQRA]
35382
35455
+
Met
CAT
[ENA]
¡û
>W131176577
ARKE01000011
Bacillota
Paenibacillus daejeonensis DSM 15491 [ARKE]
421
497
+
Met
CAT
[ENA]
¡û
>W131235815
AULW01000017
Bacillota
Paenibacillus pasadenensis DSM 19293 [AULW]
361
437
+
Met
CAT
[ENA]
¡û
>WENV183729994
PJTR01000305
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
43310
43234
-
Met
CAT
[ENA]
¢þ
>W141462477
JFHV01000151
Bacillota
Paenibacillus darwinianus [JFHV]
37337
37261
-
Met
CAT
[ENA]
¡û
>W141462564
JFHX01000023
Bacillota
Paenibacillus ehimensis A2 [JFHX]
35392
35465
+
Met
CAT
[ENA]
¡û
>C191143906
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
3037952
3037876
-
Met
CAT
-
¡û
>W1910067460
BFBX01000006
Bacillota
Paenibacillus sp. 598K [BFBX]
51404
51328
-
Met
CAT
[ENA]
¡û
>W1910154657
BILX01000073
Bacillota
Paenibacillus ehimensis NBRC 15659 [BILX]
4782
4855
+
Met
CAT
[ENA]
¡û
>W1910154842
BIMB01000098
Bacillota
Paenibacillus elgii NBRC 100335 [BIMB]
3280
3207
-
Met
CAT
[ENA]
¡û
>W1910155136
BIMH01000091
Bacillota
Paenibacillus validus NBRC 15382 [BIMH]
3046
2973
-
Met
CAT
[ENA]
¡û
>W1910155331
BIMM01000051
Bacillota
Paenibacillus pasadenensis NBRC 101214 [BIMM]
39588
39512
-
Met
CAT
[ENA]
¡û
>W1910891831
NFEZ01000004
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
234747
234823
+
Met
CAT
[ENA]
¡û
>W1810402837
PYHP01000057
Bacillota
Paenibacillus elgii AC13 [PYHP]
26982
26909
-
Met
CAT
[ENA]
¡û
>W1810679740
QKRB01000044
Bacillota
Paenibacillus sambharensis SMB1 [QKRB]
258
334
+
Met
CAT
[ENA]
¡û
>C11117488
CP002869
Bacillota
Paenibacillus mucilaginosus KNP414 [CP002869]
8285103
8285030
-
Met
CAT
[Ensembl]
¡û
>W11163543
AFHW01000156
Bacillota
Paenibacillus elgii B69 [AFHW]
4917
4990
+
Met
CAT
[ENA]
¡û
>C121009267
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
184906
184982
+
Met
CAT
[Ensembl]
¡û
>C121009380
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
8354884
8354811
-
Met
CAT
[Ensembl]
¡û
>C121009424
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
7355459
7355383
-
Met
CAT
[Ensembl]
¡û
>C121009432
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
5005852
5005778
-
Met
CAT
[Ensembl]
¡û
>C121012930
CP003422
Bacillota
Paenibacillus mucilaginosus K02 [CP003422]
186910
186986
+
Met
CAT
[Ensembl]
¡û
>C121013041
CP003422
Bacillota
Paenibacillus mucilaginosus K02 [CP003422]
8395957
8395884
-
Met
CAT
[Ensembl]
¡û
>C121013098
CP003422
Bacillota
Paenibacillus mucilaginosus K02 [CP003422]
5103185
5103111
-
Met
CAT
[Ensembl]
¡û
>C123000184
CP003422
Bacillota
Paenibacillus mucilaginosus K02 [CP003422]
5103761
5103687
-
Met
CAT
[Ensembl]
¡û
>W1610048279
BBEA01000059
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
4557
4630
+
Met
CAT
[ENA]
¡û
>W1610048363
BBEB01000061
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
4554
4627
+
Met
CAT
[ENA]
¡û
>W1610543205
JTHN01000120
Bacillota
Paenibacillus sp. A3 [JTHN]
6325
6252
-
Met
CAT
[ENA]
¡û
>W1610743134
LMSP01000013
Bacillota
Paenibacillus sp. Soil787 [LMSP]
321
397
+
Met
CAT
[ENA]
¡û
>W1610858622
LQRA01000090
Bacillota
Paenibacillus elgii [LQRA]
35382
35455
+
Met
CAT
[ENA]
¡û
>W1710044789
BBEA01000059
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
4557
4630
+
Met
CAT
[ENA]
¡û
>W1710044873
BBEB01000061
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
4554
4627
+
Met
CAT
[ENA]
¡û
>W1710505534
FMTT01000034
Bacillota
Paenibacillus tianmuensis [FMTT]
26049
25976
-
Met
CAT
[ENA]
¡û
>W1710646336
JTHN01000120
Bacillota
Paenibacillus sp. A3 [JTHN]
6325
6252
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK