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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176602 (26 seq.)
>WENV180297395
OBJA01028265
[OBJA] soil metagenome; sediment, water from around vicinity
1399
1325
-
Ala
TGC
[ENA]
¢þ
>WENV180298296
OBJA01260121
[OBJA] soil metagenome; sediment, water from around vicinity
149
75
-
Ala
TGC
[ENA]
¢þ
>WENV180586236
OCOM01030779
[OCOM] marine metagenome; seawater
522
446
-
Ala
TGC
[ENA]
¢þ
>WENV180641820
OCRN01057285
[OCRN] marine metagenome; ENVO:00002010, 'SEA WATER
76
152
+
Ala
TGC
[ENA]
¢þ
>W141075052
ASZT01000283
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
3323
3249
-
Ala
TGC
[ENA]
¡û
>WENV181854756
OGWK01016801
[OGWK] freshwater metagenome; freshwater
377
451
+
Ala
TGC
[ENA]
¢þ
>WENV182017936
OHBW01008543
[OHBW] human gut metagenome; feces
2125
2051
-
Ala
TGC
[ENA]
¢þ
>WENV182249684
OHSQ01003605
[OHSQ] human gut metagenome; feces
981
907
-
Ala
TGC
[ENA]
¢þ
>WENV183716054
PDWI01283147
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
370
444
+
Ala
TGC
[ENA]
¢þ
>WENV183722163
PDWJ01109658
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
781
707
-
Ala
TGC
[ENA]
¢þ
>WENV183743742
PJUJ01034666
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
121
47
-
Ala
TGC
[ENA]
¢þ
>WENV183743756
PJUJ01036702
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
121
47
-
Ala
TGC
[ENA]
¢þ
>WENV183743766
PJUJ01036924
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
3
77
+
Ala
TGC
[ENA]
¢þ
>WENV170675292
LCWZ01032318
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
100
24
-
Ala
TGC
[ENA]
¢þ
>WENV170688202
LFRM01233787
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5886
5962
+
Ala
TGC
[ENA]
¢þ
>WENV170968646
MTKW01012503
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2751
2677
-
Ala
TGC
[ENA]
¢þ
>W1810503685
QBKH01000017
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
3419
3345
-
Ala
TGC
[ENA]
¡û
>W1810577108
QENZ01000011
Bacteroidota
Balneicella halophila DSM 28579 [QENZ]
2115
2189
+
Ala
TGC
[ENA]
¡û
>C151047334
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
604949
605023
+
Ala
TGC
[Ensembl]
¡û
>C151047341
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
913776
913850
+
Ala
TGC
[Ensembl]
¡û
>C151047344
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
1213445
1213519
+
Ala
TGC
[Ensembl]
¡û
>C151047367
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
5326139
5326065
-
Ala
TGC
[Ensembl]
¡û
>C151047369
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
5318761
5318687
-
Ala
TGC
[Ensembl]
¡û
>C151047380
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
4331899
4331825
-
Ala
TGC
[Ensembl]
¡û
>C151047387
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
3245395
3245321
-
Ala
TGC
[Ensembl]
¡û
>C151047416
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
101391
101317
-
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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