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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176641 (89 seq.)
>W1711540097
MLZL01000015
Actinomycetota
Bifidobacterium animalis subsp. lactis [MLZL]
96552
96476
-
Lys
CTT
[ENA]
¡û
>WENV180217776
OBAR01004907
[OBAR] human gut metagenome; human gut
2400
2325
-
Lys
CTT
[ENA]
¢þ
>WENV180277772
OBHX01000800
[OBHX] metagenome; feces
4392
4467
+
Lys
CTT
[ENA]
¢þ
>WENV180333231
OBLF01000374
[OBLF] metagenome; feces
40780
40705
-
Lys
CTT
[ENA]
¢þ
>WENV180347723
OBLO01001002
[OBLO] metagenome; feces
21583
21508
-
Lys
CTT
[ENA]
¢þ
>WENV180443557
OBWY01014303
[OBWY] human gut metagenome; faeces
201
276
+
Lys
CTT
[ENA]
¢þ
>WENV180471863
OBYP01009111
[OBYP] human gut metagenome; faeces
236
311
+
Lys
CTT
[ENA]
¢þ
>WENV180495928
OCAC01000407
[OCAC] human gut metagenome; faeces
1005
930
-
Lys
CTT
[ENA]
¢þ
>WENV180598883
OCPN01000861
[OCPN] human gut metagenome; faeces
1005
930
-
Lys
CTT
[ENA]
¢þ
>WENV181434410
OGDF01000724
[OGDF] human gut metagenome; human gut
40780
40705
-
Lys
CTT
[ENA]
¢þ
>WENV181440401
OGDN01001039
[OGDN] human gut metagenome; human gut
40778
40703
-
Lys
CTT
[ENA]
¢þ
>W08009155
ABOT01000008
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [ABOT]
9579
9655
+
Lys
CTT
[ENA]
¡û
>WENV181752858
OGQQ01021796
[OGQQ] human gut metagenome; faeces
460
535
+
Lys
CTT
[ENA]
¢þ
>W141258179
CBWX010000073
Actinomycetota
Bifidobacterium animalis subsp. lactis CECT 8145 [CBWX]
99670
99746
+
Lys
CTT
[ENA]
¡û
>WENV183136186
OLOF01000176
[OLOF] human gut metagenome; faeces
40777
40702
-
Lys
CTT
[ENA]
¢þ
>WENV183144910
OLOL01014968
[OLOL] human gut metagenome; faeces
1883
1958
+
Lys
CTT
[ENA]
¢þ
>WENV183147089
OLOM01080439
[OLOM] human gut metagenome; faeces
323
248
-
Lys
CTT
[ENA]
¢þ
>WENV183147372
OLON01000110
[OLON] human gut metagenome; faeces
56452
56377
-
Lys
CTT
[ENA]
¢þ
>WENV183171552
OLPC01000376
[OLPC] human gut metagenome; faeces
40756
40681
-
Lys
CTT
[ENA]
¢þ
>WENV183174344
OLPE01000757
[OLPE] human gut metagenome; faeces
4278
4353
+
Lys
CTT
[ENA]
¢þ
>WENV183188583
OLPP01003410
[OLPP] human gut metagenome; faeces
1069
994
-
Lys
CTT
[ENA]
¢þ
>WENV183215717
OLQG01010093
[OLQG] human gut metagenome; faeces
1206
1131
-
Lys
CTT
[ENA]
¢þ
>WENV183280978
OLSB01022757
[OLSB] human gut metagenome; faeces
325
250
-
Lys
CTT
[ENA]
¢þ
>WENV183291329
OLSI01000918
[OLSI] human gut metagenome; faeces
18109
18034
-
Lys
CTT
[ENA]
¢þ
>WENV183298061
OLSM01032258
[OLSM] human gut metagenome; faeces
181
256
+
Lys
CTT
[ENA]
¢þ
>WENV183500250
OMGQ01004740
[OMGQ] human gut metagenome; human gut
3945
3870
-
Lys
CTT
[ENA]
¢þ
>WENV183517942
OMNP01031969
[OMNP] human gut metagenome; feces
31
106
+
Lys
CTT
[ENA]
¢þ
>WENV183792829
PPYF01463597
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3138
3213
+
Lys
CTT
[ENA]
¢þ
>C181023437
CP017098
Actinomycetota
Bifidobacterium animalis BL3 [CP017098]
1762055
1761980
-
Lys
CTT
-
¡û
>C181071817
CP022724
Actinomycetota
Bifidobacterium animalis subsp. lactis S7 [CP022724]
319844
319769
-
Lys
CTT
-
¡û
>C191057549
CP028460
Actinomycetota
Bifidobacterium animalis subsp. animalis CNCM I-4602 [CP028460]
1754137
1754062
-
Lys
CTT
-
¡û
>W141523701
JGYM01000011
Actinomycetota
Bifidobacterium animalis subsp. animalis [JGYM]
9692
9768
+
Lys
CTT
[ENA]
¡û
>C191073863
CP031154
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [CP031154]
1761701
1761626
-
Lys
CTT
-
¡û
>C191078825
CP031703
Actinomycetota
Bifidobacterium animalis subsp. lactis IDCC4301 [CP031703]
410534
410609
+
Lys
CTT
-
¡û
>C191144116
CP035497
Actinomycetota
Bifidobacterium animalis 01 [CP035497]
1761846
1761771
-
Lys
CTT
-
¡û
>W1910179767
BJKG01000006
Actinomycetota
Bifidobacterium animalis J063 [BJKG]
96173
96098
-
Lys
CTT
[ENA]
¡û
>W1910179797
BJKH01000008
Actinomycetota
Bifidobacterium animalis J218 [BJKH]
96167
96092
-
Lys
CTT
[ENA]
¡û
>W1910179885
BJKI01000012
Actinomycetota
Bifidobacterium animalis J231 [BJKI]
88475
88400
-
Lys
CTT
[ENA]
¡û
>W1910342709
FTRE01000006
Actinomycetota
Bifidobacterium animalis [FTRE]
96192
96117
-
Lys
CTT
[ENA]
¡û
>W1910343328
FTRP01000006
Actinomycetota
Bifidobacterium animalis [FTRP]
96192
96117
-
Lys
CTT
[ENA]
¡û
>C141002660
CP003941
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [CP003941]
1784803
1784727
-
Lys
CTT
[Ensembl]
¡û
>C09101019
CP001213
Actinomycetota
Bifidobacterium animalis subsp. lactis AD011 [CP001213]
887274
887198
-
Lys
CTT
[Ensembl]
¡û
>C09101056
CP001515
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl-04 Bl-04; ATCC SD5219 [CP001515]
1756502
1756426
-
Lys
CTT
[Ensembl]
¡û
>C09101104
CP001606
Actinomycetota
Bifidobacterium animalis subsp. lactis DSM 10140 [CP001606]
1756274
1756198
-
Lys
CTT
[Ensembl]
¡û
>W1910910847
NHMR02000002
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [NHMR]
347246
347171
-
Lys
CTT
[ENA]
¡û
>W1910923046
NIGQ01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_2 [NIGQ]
9530
9605
+
Lys
CTT
[ENA]
¡û
>W1910923096
NIGR01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_1 [NIGR]
96098
96023
-
Lys
CTT
[ENA]
¡û
>W1810084983
PESQ01000009
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [PESQ]
9647
9722
+
Lys
CTT
[ENA]
¡û
>W1810121990
PHUS01000012
Actinomycetota
Bifidobacterium animalis subsp. lactis BM 25 [PHUS]
4472
4547
+
Lys
CTT
[ENA]
¡û
>W1810541602
QDIK01000008
Actinomycetota
Bifidobacterium animalis subsp. lactis DS28_2 [QDIK]
9585
9660
+
Lys
CTT
[ENA]
¡û
>W1810541651
QDIL01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis DS27_2 [QDIL]
96188
96113
-
Lys
CTT
[ENA]
¡û
>W1810541748
QDIN01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis DS24_2 [QDIN]
96188
96113
-
Lys
CTT
[ENA]
¡û
>W1810541792
QDIO01000060
Actinomycetota
Bifidobacterium animalis subsp. lactis DS23_2 [QDIO]
6583
6658
+
Lys
CTT
[ENA]
¡û
>W1810541845
QDIP01000007
Actinomycetota
Bifidobacterium animalis DS2_2 [QDIP]
96189
96114
-
Lys
CTT
[ENA]
¡û
>W1810541944
QDIR01000006
Actinomycetota
Bifidobacterium animalis DS15_2 [QDIR]
9702
9777
+
Lys
CTT
[ENA]
¡û
>W1810542046
QDIT01000006
Actinomycetota
Bifidobacterium animalis DS11_2 [QDIT]
96188
96113
-
Lys
CTT
[ENA]
¡û
>W1810542094
QDIU01000006
Actinomycetota
Bifidobacterium animalis DS1_2 [QDIU]
9702
9777
+
Lys
CTT
[ENA]
¡û
>W1810542126
QDIV01000044
Actinomycetota
Bifidobacterium animalis subsp. lactis CF3_2 [QDIV]
15090
15015
-
Lys
CTT
[ENA]
¡û
>W1810542333
QDIZ01000009
Actinomycetota
Bifidobacterium animalis DS20_2 [QDIZ]
9548
9623
+
Lys
CTT
[ENA]
¡û
>W1810837831
QSSU01000008
Actinomycetota
Bifidobacterium animalis TF04-14 [QSSU]
79498
79423
-
Lys
CTT
[ENA]
¡û
>W1810839914
QSUF01000009
Actinomycetota
Bifidobacterium animalis OM05-7AA [QSUF]
9535
9610
+
Lys
CTT
[ENA]
¡û
>C151026479
CP007522
Actinomycetota
Bifidobacterium animalis subsp. lactis KLDS2.0603 [CP007522]
1756019
1755943
-
Lys
CTT
[Ensembl]
¡û
>C151033700
CP007755
Actinomycetota
Bifidobacterium animalis RH [CP007755]
1751187
1751111
-
Lys
CTT
[Ensembl]
¡û
>C151042222
CP009045
Actinomycetota
Bifidobacterium animalis subsp. lactis BF052 [CP009045]
1756191
1756115
-
Lys
CTT
[Ensembl]
¡û
>C151068793
CP010433
Actinomycetota
Bifidobacterium animalis A6 [CP010433]
1761848
1761772
-
Lys
CTT
[Ensembl]
¡û
>C10101333
CP001853
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [CP001853]
453572
453496
-
Lys
CTT
[Ensembl]
¡û
>C10101360
CP001892
Actinomycetota
Bifidobacterium animalis subsp. lactis V9 [CP001892]
1761843
1761767
-
Lys
CTT
[Ensembl]
¡û
>C11101916
CP003039
Actinomycetota
Bifidobacterium animalis subsp. lactis BLC1 [CP003039]
1761743
1761667
-
Lys
CTT
[Ensembl]
¡û
>C11101965
CP002915
Actinomycetota
Bifidobacterium animalis subsp. lactis CNCM I-2494 [CP002915]
1761098
1761022
-
Lys
CTT
[Ensembl]
¡û
>C121002623
CP002567
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 25527 [CP002567]
1754273
1754197
-
Lys
CTT
[Ensembl]
¡û
>C121013659
CP003497
Actinomycetota
Bifidobacterium animalis subsp. lactis B420 [CP003497]
1756392
1756316
-
Lys
CTT
[Ensembl]
¡û
>C121013708
CP003498
Actinomycetota
Bifidobacterium animalis subsp. lactis Bi-07 [CP003498]
1756612
1756536
-
Lys
CTT
[Ensembl]
¡û
>C161087471
CP015407
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [CP015407]
265966
265890
-
Lys
CTT
[Ensembl]
¡û
>W1610027728
AWFK01000026
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
9600
9676
+
Lys
CTT
[ENA]
¡û
>W1610027769
AWFL01000009
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27536 [AWFL]
9514
9590
+
Lys
CTT
[ENA]
¡û
>W1610027797
AWFM01000003
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27674 [AWFM]
96073
95997
-
Lys
CTT
[ENA]
¡û
>W1610027873
AWFN01000005
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
9457
9533
+
Lys
CTT
[ENA]
¡û
>W1610027897
AWFO01000005
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
9616
9692
+
Lys
CTT
[ENA]
¡û
>W1610027979
AWFP01000016
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [AWFP]
9606
9682
+
Lys
CTT
[ENA]
¡û
>W1610028027
AWFQ01000004
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 27672 [AWFQ]
285574
285498
-
Lys
CTT
[ENA]
¡û
>W1610083147
CBUQ010000008
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
9570
9646
+
Lys
CTT
[ENA]
¡û
>W121031701
AHGW01000005
Actinomycetota
Bifidobacterium animalis subsp. lactis BS 01 [AHGW]
456082
456006
-
Lys
CTT
[ENA]
¡û
>C131012148
CP004053
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl12 [CP004053]
1756183
1756107
-
Lys
CTT
[Ensembl]
¡û
>W1610519599
JDUI01000010
Actinomycetota
Bifidobacterium pullorum DSM 20433 [JDUI]
28495
28419
-
Lys
CTT
[ENA]
¡û
>W1710023936
AWFK01000026
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
9600
9676
+
Lys
CTT
[ENA]
¡û
>W1710023983
AWFN01000005
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
9457
9533
+
Lys
CTT
[ENA]
¡û
>W1710024007
AWFO01000005
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
9616
9692
+
Lys
CTT
[ENA]
¡û
>W1710088267
CBUQ010000008
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
9570
9646
+
Lys
CTT
[ENA]
¡û
>W1710615054
JDUI01000010
Actinomycetota
Bifidobacterium pullorum DSM 20433 [JDUI]
28495
28419
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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