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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176694 (79 seq.)
>W1710784013
LJGP01000013
Bacillota
Lactobacillus crispatus [LJGP]
29072
29147
+
Pro
CGG
[ENA]
¡û
>W1711083895
LSVI01000088
Bacillota
Lactobacillus helveticus [LSVI]
10851
10778
-
Pro
CGG
[ENA]
¡û
>W1711083949
LSVJ01000073
Bacillota
Lactobacillus helveticus [LSVJ]
10852
10779
-
Pro
CGG
[ENA]
¡û
>W1711632569
MPSU01000060
Bacillota
Lactobacillus helveticus [MPSU]
40842
40769
-
Pro
CGG
[ENA]
¡û
>C171051850
CP016827
Bacillota
Lactobacillus helveticus D76 [CP016827]
1146049
1145976
-
Pro
CGG
-
¡û
>C171102934
CP020029
Bacillota
Lactobacillus helveticus D75 [CP020029]
1765936
1765863
-
Pro
CGG
-
¡û
>WENV180983581
ODVF01020660
[ODVF] human metagenome; G_DNA_Supragingival plaque
3
76
+
Pro
CGG
[ENA]
¢þ
>WENV181469073
OGES01045417
[OGES] metagenome; Human gut stool
3
78
+
Pro
CGG
[ENA]
¢þ
>W141228912
BAMG01000001
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens JCM 6985 [BAMG]
44119
44192
+
Pro
CGG
[ENA]
¡û
>C08006096
CP000517
Bacillota
Lactobacillus helveticus DPC 4571 [CP000517]
307725
307798
+
Pro
CGG
[Ensembl]
¡û
>W141255427
CBUH010000066
Bacillota
Lactobacillus helveticus CIRM-BIA 953 [CBUH]
11275
11202
-
Pro
CGG
[ENA]
¡û
>W141255534
CBUK010000021
Bacillota
Lactobacillus helveticus CIRM-BIA 951 [CBUK]
11123
11050
-
Pro
CGG
[ENA]
¡û
>W141255591
CBUL010000042
Bacillota
Lactobacillus helveticus CIRM-BIA 104 [CBUL]
22124
22197
+
Pro
CGG
[ENA]
¡û
>W141255647
CBUM010000032
Bacillota
Lactobacillus helveticus CIRM-BIA 103 [CBUM]
15357
15430
+
Pro
CGG
[ENA]
¡û
>W141255704
CBUN010000034
Bacillota
Lactobacillus helveticus CIRM-BIA 101 [CBUN]
22406
22479
+
Pro
CGG
[ENA]
¡û
>WENV182856998
OKNS01000222
[OKNS] human gut metagenome; human gut
402
327
-
Pro
CGG
[ENA]
¢þ
>WENV183772737
PPYF01019561
[PPYF] human gut metagenome; stool from patient with Crohn's disease
341
416
+
Pro
CGG
[ENA]
¢þ
>C181017291
CP015444
Bacillota
Lactobacillus helveticus FAM8627 [CP015444]
1567655
1567582
-
Pro
CGG
-
¡û
>C181017429
CP015496
Bacillota
Lactobacillus helveticus FAM8105 [CP015496]
291191
291264
+
Pro
CGG
-
¡û
>C181017491
CP015498
Bacillota
Lactobacillus helveticus FAM22155 [CP015498]
320067
320140
+
Pro
CGG
-
¡û
>C191014808
CP017982
Bacillota
Lactobacillus helveticus LH99 [CP017982]
261288
261361
+
Pro
CGG
-
¡û
>C191016275
CP019581
Bacillota
Lactobacillus helveticus LH5 [CP019581]
1764839
1764912
+
Pro
CGG
-
¡û
>C191073244
CP031016
Bacillota
Lactobacillus helveticus [CP031016]
294551
294624
+
Pro
CGG
-
¡û
>C191073312
CP031018
Bacillota
Lactobacillus helveticus [CP031018]
310350
310423
+
Pro
CGG
-
¡û
>C191138816
CP035307
Bacillota
Lactobacillus helveticus IDCC3801 [CP035307]
1708461
1708388
-
Pro
CGG
-
¡û
>W09128100
ACLM01000101
Bacillota
Lactobacillus helveticus DSM 20075 [ACLM]
14429
14502
+
Pro
CGG
[ENA]
¡û
>W1910871259
NCWZ01000001
Bacillota
Lactobacillus kefiranofaciens KR [NCWZ]
143000
142927
-
Pro
CGG
[ENA]
¡û
>W1910922953
NIGM01000030
Bacillota
Lactobacillus helveticus M92 [NIGM]
37690
37617
-
Pro
CGG
[ENA]
¡û
>W1910923350
NIGX01000010
Bacillota
Lactobacillus helveticus LMG S-29187 [NIGX]
22712
22785
+
Pro
CGG
[ENA]
¡û
>W1911218729
NRQX01000320
Bacillota
Lactobacillus helveticus UC1156 [NRQX]
15440
15513
+
Pro
CGG
[ENA]
¡û
>W1911531944
OGTV01000052
Bacillota
Lactobacillus helveticus [OGTV]
15362
15435
+
Pro
CGG
[ENA]
¡û
>W1911531998
OGTV02000051
Bacillota
Lactobacillus helveticus [OGTV]
15362
15435
+
Pro
CGG
[ENA]
¡û
>W1911702126
QNXC01000036
Bacillota
Lactobacillus helveticus TJA10 [QNXC]
8908
8835
-
Pro
CGG
[ENA]
¡û
>W1810177298
PJRL01000027
Bacillota
Lactobacillus helveticus ATCC 12046 [PJRL]
74880
74807
-
Pro
CGG
[ENA]
¡û
>W1810473214
QAHI01000047
Bacillota
Lactobacillus helveticus DS21_8 [QAHI]
3002
3075
+
Pro
CGG
[ENA]
¡û
>W1810473259
QAHJ01000016
Bacillota
Lactobacillus helveticus DS12_8 [QAHJ]
10879
10806
-
Pro
CGG
[ENA]
¡û
>W1810489032
QAZT01000016
Bacillota
Lactobacillus helveticus DS18_8 [QAZT]
23726
23799
+
Pro
CGG
[ENA]
¡û
>W1810489097
QAZU01000019
Bacillota
Lactobacillus helveticus DS3_8 [QAZU]
10879
10806
-
Pro
CGG
[ENA]
¡û
>W1810665817
QJOG01000009
Bacillota
Lactobacillus helveticus FAM22157 [QJOG]
14635
14708
+
Pro
CGG
[ENA]
¡û
>W1810665879
QJOH01000010
Bacillota
Lactobacillus helveticus FAM22076 [QJOH]
10851
10778
-
Pro
CGG
[ENA]
¡û
>W1810665933
QJOI01000004
Bacillota
Lactobacillus helveticus FAM13019 [QJOI]
12238
12165
-
Pro
CGG
[ENA]
¡û
>W1810665998
QJOJ01000013
Bacillota
Lactobacillus helveticus FAM1450 [QJOJ]
22368
22441
+
Pro
CGG
[ENA]
¡û
>W1810666061
QJOK01000022
Bacillota
Lactobacillus helveticus FAM1213 [QJOK]
10918
10845
-
Pro
CGG
[ENA]
¡û
>W1810666116
QJOL01000009
Bacillota
Lactobacillus helveticus FAM1182 [QJOL]
10851
10778
-
Pro
CGG
[ENA]
¡û
>W1810666178
QJOM01000003
Bacillota
Lactobacillus helveticus FAM23285 [QJOM]
22952
23025
+
Pro
CGG
[ENA]
¡û
>W1810666238
QJON01000015
Bacillota
Lactobacillus helveticus FAM19191 [QJON]
23522
23595
+
Pro
CGG
[ENA]
¡û
>W1810666303
QJOO01000012
Bacillota
Lactobacillus helveticus FAM19188 [QJOO]
22489
22562
+
Pro
CGG
[ENA]
¡û
>W1810666366
QJOP01000008
Bacillota
Lactobacillus helveticus FAM14499 [QJOP]
22884
22957
+
Pro
CGG
[ENA]
¡û
>W1810666424
QJOQ01000013
Bacillota
Lactobacillus helveticus FAM8102 [QJOQ]
22902
22975
+
Pro
CGG
[ENA]
¡û
>W1810666486
QJOR01000003
Bacillota
Lactobacillus helveticus FAM14275 [QJOR]
22490
22563
+
Pro
CGG
[ENA]
¡û
>W1810666547
QJOS01000011
Bacillota
Lactobacillus helveticus FAM8106 [QJOS]
22952
23025
+
Pro
CGG
[ENA]
¡û
>W1810679576
QKQX01000007
Bacillota
Lactobacillus helveticus FAM21493 [QKQX]
23313
23386
+
Pro
CGG
[ENA]
¡û
>C151003386
CP002427
Bacillota
Lactobacillus helveticus H9 [CP002427]
251763
251836
+
Pro
CGG
[Ensembl]
¡û
>C151061680
CP009907
Bacillota
Lactobacillus helveticus KLDS1.8701 [CP009907]
475939
476012
+
Pro
CGG
[Ensembl]
¡û
>C151081820
CP011386
Bacillota
Lactobacillus helveticus MB2-1 [CP011386]
264596
264669
+
Pro
CGG
[Ensembl]
¡û
>C10108278
FN692037
Bacillota
Lactobacillus crispatus ST1 [FN692037]
301647
301722
+
Pro
CGG
[Ensembl]
¡û
>C11112864
CP002429
Bacillota
Lactobacillus helveticus H10 [CP002429]
289011
289084
+
Pro
CGG
[Ensembl]
¡û
>C11113010
CP002764
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens ZW3 [CP002764]
2095006
2095079
+
Pro
CGG
[Ensembl]
¡û
>W1511354445
JRQG01000030
Bacillota
Lactobacillus helveticus ATCC 10386 [JRQG]
22085
22158
+
Pro
CGG
[ENA]
¡û
>W1511355755
JRTS01000029
Bacillota
Lactobacillus helveticus M3 [JRTS]
22114
22187
+
Pro
CGG
[ENA]
¡û
>W11138506
AEIR01000004
Bacillota
Lactobacillus helveticus R0052 [AEIR]
425575
425502
-
Pro
CGG
[ENA]
¡û
>W11152523
AEYL01000301
Bacillota
Lactobacillus helveticus MTCC 5463 [AEYL]
22386
22459
+
Pro
CGG
[ENA]
¡û
>C161041456
CP012381
Bacillota
Lactobacillus helveticus CAUH18 [CP012381]
297560
297633
+
Pro
CGG
-
¡û
>C161046994
CP012890
Bacillota
Lactobacillus gallinarum HFD4 [CP012890]
259077
259004
-
Pro
CGG
[Ensembl]
¡û
>W1610035321
AZEK01000051
Bacillota
Lactobacillus helveticus DSM 20075 = CGMCC 1.1877 [AZEK]
69
142
+
Pro
CGG
[ENA]
¡û
>W1610035415
AZEM01000021
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [AZEM]
143029
142956
-
Pro
CGG
[ENA]
¡û
>W1610037732
AZGG01000002
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM [AZGG]
44390
44463
+
Pro
CGG
[ENA]
¡û
>W1610044546
BBAQ01000002
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [BBAQ]
69806
69733
-
Pro
CGG
[ENA]
¡û
>C131001239
CP002081
Bacillota
Lactobacillus helveticus CNRZ32 [CP002081]
2060923
2060850
-
Pro
CGG
[Ensembl]
¡û
>C131007098
CP003799
Bacillota
Lactobacillus helveticus R0052 [CP003799]
281773
281846
+
Pro
CGG
[Ensembl]
¡û
>W1610529798
JQCJ01000013
Bacillota
Lactobacillus helveticus [JQCJ]
11647
11574
-
Pro
CGG
[ENA]
¡û
>W1610648521
LJGP01000013
Bacillota
Lactobacillus crispatus [LJGP]
29072
29147
+
Pro
CGG
[ENA]
¡û
>W1610922648
LSVI01000088
Bacillota
Lactobacillus helveticus [LSVI]
10851
10778
-
Pro
CGG
[ENA]
¡û
>W1610922702
LSVJ01000073
Bacillota
Lactobacillus helveticus [LSVJ]
10852
10779
-
Pro
CGG
[ENA]
¡û
>W1710032454
AZEM01000021
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [AZEM]
143029
142956
-
Pro
CGG
[ENA]
¡û
>W1710034771
AZGG01000002
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM [AZGG]
44390
44463
+
Pro
CGG
[ENA]
¡û
>W1710041644
BBAQ01000002
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [BBAQ]
69806
69733
-
Pro
CGG
[ENA]
¡û
>W1710509266
FMXC01000002
Bacillota
Lactobacillus kefiranofaciens [FMXC]
143311
143238
-
Pro
CGG
[ENA]
¡û
>W1710631388
JQCJ01000013
Bacillota
Lactobacillus helveticus [JQCJ]
11647
11574
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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