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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176699 (85 seq.)
>W1711284832
LZRO01000005
Bacteroidota
Bizionia sp. APA-3 [LZRO]
34464
34538
+
Asn
GTT
[ENA]
¡û
>W1711621236
MPCX01000002
Bacteroidota
Lacinutrix sp. MedPE-SW [MPCX]
247172
247248
+
Asn
GTT
[ENA]
¡û
>W131211429
ATMR01000126
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
40351
40277
-
Asn
GTT
[ENA]
¡û
>C171059703
CP017260
Bacteroidota
Formosa sp. Hel1_33_131 [CP017260]
1478367
1478443
+
Asn
GTT
-
¡û
>C171092539
CP019352
Bacteroidota
Lacinutrix venerupis DOK2-8 [CP019352]
126114
126190
+
Asn
GTT
-
¡û
>WENV180101590
OAOV01020590
[OAOV] marine metagenome; ENVO:00002010
102
176
+
Asn
GTT
[ENA]
¢þ
>WENV180383231
OBOU01012456
[OBOU] marine metagenome; ENV:00002010
652
728
+
Asn
GTT
[ENA]
¢þ
>WENV181324004
OFLA01002266
[OFLA] marine metagenome; seawater
344
420
+
Asn
GTT
[ENA]
¢þ
>WENV181325565
OFLJ01005534
[OFLJ] seawater metagenome; seawater
1249
1325
+
Asn
GTT
[ENA]
¢þ
>WENV182540461
OJAJ01002230
[OJAJ] seawater metagenome; Sea water
859
935
+
Asn
GTT
[ENA]
¢þ
>WENV182543040
OJAZ01020030
[OJAZ] seawater metagenome; Sea water
569
645
+
Asn
GTT
[ENA]
¢þ
>WENV182545739
OJBN01019725
[OJBN] seawater metagenome; Sea water
849
773
-
Asn
GTT
[ENA]
¢þ
>WENV182553750
OJCR01027529
[OJCR] seawater metagenome; Sea water
920
996
+
Asn
GTT
[ENA]
¢þ
>WENV182556393
OJDG01006953
[OJDG] seawater metagenome; Sea water
1799
1875
+
Asn
GTT
[ENA]
¢þ
>WENV182558401
OJDM01001592
[OJDM] seawater metagenome; Sea water
1364
1440
+
Asn
GTT
[ENA]
¢þ
>WENV182562825
OJEA01004301
[OJEA] seawater metagenome; Sea water
125
49
-
Asn
GTT
[ENA]
¢þ
>WENV182563265
OJEB01004142
[OJEB] seawater metagenome; Sea water
1040
1116
+
Asn
GTT
[ENA]
¢þ
>WENV182564292
OJEE01002895
[OJEE] seawater metagenome; Sea water
408
332
-
Asn
GTT
[ENA]
¢þ
>WENV182565737
OJEH01036111
[OJEH] seawater metagenome; Sea water
13
89
+
Asn
GTT
[ENA]
¢þ
>WENV182573394
OJFP01001322
[OJFP] seawater metagenome; Sea water
12420
12496
+
Asn
GTT
[ENA]
¢þ
>WENV182574921
OJFS01008195
[OJFS] seawater metagenome; Sea water
583
507
-
Asn
GTT
[ENA]
¢þ
>WENV182576726
OJFY01003135
[OJFY] seawater metagenome; Sea water
1326
1402
+
Asn
GTT
[ENA]
¢þ
>WENV182578633
OJGO01008684
[OJGO] seawater metagenome; Sea water
304
380
+
Asn
GTT
[ENA]
¢þ
>WENV182580690
OJGW01007689
[OJGW] seawater metagenome; Sea water
242
166
-
Asn
GTT
[ENA]
¢þ
>WENV182582240
OJHA01001528
[OJHA] seawater metagenome; Sea water
1084
1008
-
Asn
GTT
[ENA]
¢þ
>WENV182582620
OJHB01004213
[OJHB] seawater metagenome; Sea water
1300
1376
+
Asn
GTT
[ENA]
¢þ
>WENV182585427
OJHH01020434
[OJHH] seawater metagenome; Sea water
667
593
-
Asn
GTT
[ENA]
¢þ
>WENV182588441
OJHT01002435
[OJHT] seawater metagenome; Sea water
191
115
-
Asn
GTT
[ENA]
¢þ
>WENV182589472
OJID01005441
[OJID] seawater metagenome; Sea water
504
580
+
Asn
GTT
[ENA]
¢þ
>WENV182590757
OJIK01000277
[OJIK] seawater metagenome; Sea water
481
405
-
Asn
GTT
[ENA]
¢þ
>WENV182594107
OJIV01000414
[OJIV] seawater metagenome; Sea water
16125
16199
+
Asn
GTT
[ENA]
¢þ
>W141276311
JADR01000002
Bacteroidota
Olleya marilimosa CAM030 [JADR]
122110
122034
-
Asn
GTT
[ENA]
¡û
>W141276341
JADS01000003
Bacteroidota
Olleya sp. VCSA23 [JADS]
11001
10925
-
Asn
GTT
[ENA]
¡û
>W141276375
JADT01000003
Bacteroidota
Olleya sp. VCSM12 [JADT]
180711
180787
+
Asn
GTT
[ENA]
¡û
>WENV183053692
OLGP01002649
[OLGP] seawater metagenome; Sea water
526
450
-
Asn
GTT
[ENA]
¢þ
>WENV183054791
OLGU01003939
[OLGU] seawater metagenome; Sea water
1804
1880
+
Asn
GTT
[ENA]
¢þ
>WENV183054963
OLGW01000080
[OLGW] seawater metagenome; Sea water
789
713
-
Asn
GTT
[ENA]
¢þ
>WENV183056669
OLHJ01003643
[OLHJ] seawater metagenome; Sea water
3330
3256
-
Asn
GTT
[ENA]
¢þ
>WENV183058185
OLHN01018093
[OLHN] seawater metagenome; Sea water
147
71
-
Asn
GTT
[ENA]
¢þ
>WENV183058938
OLHR01039520
[OLHR] seawater metagenome; Sea water
555
479
-
Asn
GTT
[ENA]
¢þ
>WENV183060286
OLHX01001433
[OLHX] seawater metagenome; Sea water
838
762
-
Asn
GTT
[ENA]
¢þ
>WENV183060886
OLHY01010435
[OLHY] seawater metagenome; Sea water
366
290
-
Asn
GTT
[ENA]
¢þ
>WENV183619486
OOFQ01009827
[OOFQ] marine metagenome; seawater
845
921
+
Asn
GTT
[ENA]
¢þ
>WENV183630590
OOGS01052409
[OOGS] marine metagenome; seawater
327
253
-
Asn
GTT
[ENA]
¢þ
>WENV170015714
AZII01004355
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
111
187
+
Asn
GTT
[ENA]
¢þ
>WENV170297961
CESF01028663
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
117083
117007
-
Asn
GTT
[ENA]
¢þ
>WENV170327372
CESU01073503
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
323
247
-
Asn
GTT
[ENA]
¢þ
>WENV170782708
MAAC01011177
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
81636
81560
-
Asn
GTT
[ENA]
¢þ
>WENV170826684
MDSY01115015
[MDSY] marine metagenome; seawater
742
818
+
Asn
GTT
[ENA]
¢þ
>WENV170828882
MDSY01157228
[MDSY] marine metagenome; seawater
90
14
-
Asn
GTT
[ENA]
¢þ
>WENV170934125
MDTG01232796
[MDTG] marine metagenome; seawater
117138
117062
-
Asn
GTT
[ENA]
¢þ
>WENV170950384
MEHZ011493682
[MEHZ] marine metagenome; marine surface water
459
535
+
Asn
GTT
[ENA]
¢þ
>C181113309
CP025117
Bacteroidota
Olleya sp. Bg11-27 [CP025117]
875394
875468
+
Asn
GTT
-
¡û
>C181113364
CP025118
Bacteroidota
Lacinutrix sp. Bg11-31 [CP025118]
2788092
2788166
+
Asn
GTT
-
¡û
>C181202799
CP031612
Bacteroidota
Olleya aquimaris DAU311 [CP031612]
2405820
2405894
+
Asn
GTT
-
¡û
>C191166173
CP039451
Bacteroidota
Psychroserpens sp. NJDZ02 [CP039451]
1441169
1441095
-
Asn
GTT
-
¡û
>W1910547450
FZNT01000008
Bacteroidota
Lutibacter agarilyticus DSM 29150 [FZNT]
235247
235321
+
Asn
GTT
[ENA]
¡û
>W1910693650
MDGO01000009
Bacteroidota
Gaetbulibacter sp. 5U11 [MDGO]
796422
796496
+
Asn
GTT
[ENA]
¡û
>W1810157330
PJBW01000004
Bacteroidota
Olleya sp. 1-3 [PJBW]
228037
228111
+
Asn
GTT
[ENA]
¡û
>W1810591974
QFWS01000004
Bacteroidota
Flavobacteriaceae bacterium LYZ1037 LYZ1037 [QFWS]
210032
210106
+
Asn
GTT
[ENA]
¡û
>W1810596527
QGGP01000001
Bacteroidota
Xanthomarina spongicola DSM 22637 [QGGP]
431133
431209
+
Asn
GTT
[ENA]
¡û
>W1810693686
QLLO01000001
Bacteroidota
Olleya aquimaris DSM 24464 [QLLO]
303843
303917
+
Asn
GTT
[ENA]
¡û
>W1810759605
QPJO01000001
Bacteroidota
Winogradskyella arenosi CECT 7958 [QPJO]
295259
295185
-
Asn
GTT
[ENA]
¡û
>W1810787620
QRDV01000001
Bacteroidota
Winogradskyella eximia CECT 7946 [QRDV]
296927
296853
-
Asn
GTT
[ENA]
¡û
>W1810788354
QREI01000007
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
17302
17228
-
Asn
GTT
[ENA]
¡û
>W1810885404
QUNH01000001
Bacteroidota
Winogradskyella sediminis DSM 28134 [QUNH]
528455
528381
-
Asn
GTT
[ENA]
¡û
>C151002326
AP014583
Bacteroidota
Winogradskyella sp. PG-2 [AP014583]
1616980
1617056
+
Asn
GTT
[Ensembl]
¡û
>C11111970
CP002825
Bacteroidota
Lacinutrix sp. 5H-3-7-4 [CP002825]
1321316
1321392
+
Asn
GTT
[Ensembl]
¡û
>W1511388616
JSWG01000009
Bacteroidota
Psychroserpens jangbogonensis PAMC 27130 [JSWG]
319165
319239
+
Asn
GTT
[ENA]
¡û
>W1511432829
JUGU01000001
Bacteroidota
Psychroserpens sp. Hel_I_66 [JUGU]
3090015
3089939
-
Asn
GTT
[ENA]
¡û
>W1511534130
JYNQ01000001
Bacteroidota
Lacinutrix sp. Hel_I_90 Hel_I_90 Hel_I _90 [JYNQ]
2413667
2413743
+
Asn
GTT
[ENA]
¡û
>W11152605
AEYR01000001
Bacteroidota
Lacinutrix sp. 5H-3-7-4 5H-3-7-4 [AEYR]
785664
785740
+
Asn
GTT
[ENA]
¡û
>W11176838
AFXZ01000018
Bacteroidota
Bizionia argentinensis JUB59 [AFXZ]
18759
18835
+
Asn
GTT
[ENA]
¡û
>W1610060578
BCBW01000037
Bacteroidota
Olleya sp. ITB9 [BCBW]
5936
5860
-
Asn
GTT
[ENA]
¡û
>W1610632932
LIQG01000026
Bacteroidota
Lacinutrix mariniflava [LIQG]
389146
389222
+
Asn
GTT
[ENA]
¡û
>W1610632984
LIQH01000036
Bacteroidota
Lacinutrix algicola [LIQH]
67110
67034
-
Asn
GTT
[ENA]
¡û
>W1611042617
LZRO01000005
Bacteroidota
Bizionia sp. APA-3 [LZRO]
34464
34538
+
Asn
GTT
[ENA]
¡û
>W1710057833
BCBW01000037
Bacteroidota
Olleya sp. ITB9 [BCBW]
5936
5860
-
Asn
GTT
[ENA]
¡û
>W1710516978
FNCZ01000001
Bacteroidota
Winogradskyella thalassocola [FNCZ]
432169
432093
-
Asn
GTT
[ENA]
¡û
>W1710532542
FNQK01000002
Bacteroidota
Bizionia paragorgiae [FNQK]
84639
84563
-
Asn
GTT
[ENA]
¡û
>W1710543566
FOAB01000008
Bacteroidota
Aquimarina amphilecti [FOAB]
189945
190021
+
Asn
GTT
[ENA]
¡û
>W1710565794
FORM01000001
Bacteroidota
Olleya namhaensis [FORM]
678502
678578
+
Asn
GTT
[ENA]
¡û
>W1710570949
FOVN01000001
Bacteroidota
Bizionia echini [FOVN]
553837
553761
-
Asn
GTT
[ENA]
¡û
>W1710767364
LIQG01000026
Bacteroidota
Lacinutrix mariniflava [LIQG]
389146
389222
+
Asn
GTT
[ENA]
¡û
>W1710767416
LIQH01000036
Bacteroidota
Lacinutrix algicola [LIQH]
67110
67034
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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