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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176767 (61 seq.)
>W1710875573
LMOM01000065
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
319166
319090
-
Pro
GGG
[ENA]
¡û
>W1711708252
MSTI01000095
Deinococcota
Deinococcus marmoris [MSTI]
11199
11275
+
Pro
GGG
[ENA]
¡û
>W1711743930
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
1286540
1286464
-
Pro
GGG
[ENA]
¡û
>W1712080687
NHMK01000031
Deinococcota
Deinococcus indicus [NHMK]
3828
3752
-
Pro
GGG
[ENA]
¡û
>W131104584
APCS01000067
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
7906
7830
-
Pro
GGG
[ENA]
¡û
>W131178646
ARLS01000042
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
124669
124745
+
Pro
GGG
[ENA]
¡û
>W131213879
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
1382640
1382716
+
Pro
GGG
[ENA]
¡û
>W131237125
AUMV01000021
Deinococcota
Deinococcus ficus DSM 19119 [AUMV]
40509
40585
+
Pro
GGG
[ENA]
¡û
>C007766
CP000359
Deinococcota
Deinococcus geothermalis DSM 11300 [CP000359]
227407
227331
-
Pro
GGG
[Ensembl]
¡û
>C007947
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2186731
2186807
+
Pro
GGG
[Ensembl]
¡û
>WENV180232140
OBCO01000134
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
32214
32138
-
Pro
GGG
[ENA]
¢þ
>WENV180233119
OBCP01000130
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
32214
32138
-
Pro
GGG
[ENA]
¢þ
>WENV180569801
OCLR01000473
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
21062
21138
+
Pro
GGG
[ENA]
¢þ
>WENV180570750
OCLS01000473
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
21067
21143
+
Pro
GGG
[ENA]
¢þ
>WENV180571486
OCLT01000132
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
32214
32138
-
Pro
GGG
[ENA]
¢þ
>WENV180573739
OCLW01000132
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
32214
32138
-
Pro
GGG
[ENA]
¢þ
>WENV180639796
OCRL01000134
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
32214
32138
-
Pro
GGG
[ENA]
¢þ
>WENV180640728
OCRM01000132
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
32214
32138
-
Pro
GGG
[ENA]
¢þ
>WENV181223605
OFDC01045705
[OFDC] hot springs metagenome; Water
798
722
-
Pro
GGG
[ENA]
¢þ
>WENV181411541
OGCI01030535
[OGCI] hot springs metagenome; Hot spring water
1207
1283
+
Pro
GGG
[ENA]
¢þ
>W141154766
AXLL01000034
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
12860
12936
+
Pro
GGG
[ENA]
¡û
>W141169940
AXWT01000032
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
2916
2992
+
Pro
GGG
[ENA]
¡û
>W141220823
AZYF01000444
Deinococcota
Deinococcus pimensis DSM 21231 [AZYF]
3810
3886
+
Pro
GGG
[ENA]
¡û
>C181134325
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
308412
308336
-
Pro
GGG
-
¡û
>C181185075
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
68936
69012
+
Pro
GGG
-
¡û
>C181196490
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
78034
77958
-
Pro
GGG
-
¡û
>C191018453
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
2611765
2611689
-
Pro
GGG
-
¡û
>W141525704
JHAC01000082
Deinococcota
Deinococcus phoenicis [JHAC]
22477
22553
+
Pro
GGG
[ENA]
¡û
>W09101990
AAHE01000002
Deinococcota
Deinococcus geothermalis DSM 11300 [AAHE]
114207
114131
-
Pro
GGG
[ENA]
¡û
>W141561469
JHYL01000006
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
32484
32408
-
Pro
GGG
[ENA]
¡û
>W141702061
JMLF01000004
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
32516
32440
-
Pro
GGG
[ENA]
¡û
>W141711956
JMQF01000042
Deinococcota
Deinococcus sp. RL [JMQF]
71648
71572
-
Pro
GGG
[ENA]
¡û
>W141731127
JNIV01000030
Deinococcota
Deinococcus marmoris DSM 12784 [JNIV]
47536
47460
-
Pro
GGG
[ENA]
¡û
>W141731171
JNIW01000015
Deinococcota
Deinococcus frigens DSM 12807 [JNIW]
83525
83449
-
Pro
GGG
[ENA]
¡û
>W141816960
JQKG01000068
Deinococcota
Deinococcus misasensis DSM 22328 [JQKG]
16773
16697
-
Pro
GGG
[ENA]
¡û
>W141821128
JQNI01000002
Deinococcota
Deinococcus sp. YIM 77859 [JQNI]
2160051
2159975
-
Pro
GGG
[ENA]
¡û
>C09103881
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
133822
133898
+
Pro
GGG
[Ensembl]
¡û
>W1911597492
PNOR01000032
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
23934
23858
-
Pro
GGG
[ENA]
¡û
>W1911788265
QYCQ01000028
Deinococcota
Deinococcus sp. RM [QYCQ]
3753
3677
-
Pro
GGG
[ENA]
¡û
>W1911802511
QYUJ01000014
Deinococcota
Deinococcus cavernae K2S05-167 [QYUJ]
2259798
2259722
-
Pro
GGG
[ENA]
¡û
>W1810003546
BFAG01000005
Deinococcota
Deinococcus aerius TR0125 [BFAG]
9142
9066
-
Pro
GGG
[ENA]
¡û
>SRA1003470
SRR002326.487914
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
296
220
-
Pro
GGG
[SRA]
>W1810238350
PPPD01000001
Deinococcota
Deinococcus koreensis SJW1-2 [PPPD]
1117659
1117583
-
Pro
GGG
[ENA]
¡û
>W1810423321
PYSV01000004
Deinococcota
Deinococcus arcticus OD32 [PYSV]
141684
141608
-
Pro
GGG
[ENA]
¡û
>W1810671620
QJSX01000014
Deinococcota
Deinococcus yavapaiensis KR-236 DSM 18048 [QJSX]
23025
22949
-
Pro
GGG
[ENA]
¡û
>C151063669
CP010028
Deinococcota
Deinococcus radiopugnans DY59 [CP010028]
209304
209228
-
Pro
GGG
[Ensembl]
¡û
>C151081891
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
1882075
1882151
+
Pro
GGG
[Ensembl]
¡û
>C10105349
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2186731
2186807
+
Pro
GGG
[Ensembl]
¡û
>C11107230
CP002536
Deinococcota
Deinococcus proteolyticus MRP [CP002536]
1743015
1743091
+
Pro
GGG
[Ensembl]
¡û
>C11107276
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2186731
2186807
+
Pro
GGG
[Ensembl]
¡û
>C121002055
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
248472
248548
+
Pro
GGG
[Ensembl]
¡û
>C161061580
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
69447
69523
+
Pro
GGG
[Ensembl]
¡û
>C161082994
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
538033
537957
-
Pro
GGG
-
¡û
>W1610061613
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
3759
3683
-
Pro
GGG
[ENA]
¡û
>C131003594
CP003382
Deinococcota
Deinococcus peraridilitoris DSM 19664 [CP003382]
1190535
1190459
-
Pro
GGG
[Ensembl]
¡û
>W1610638999
LIYN01000330
Deinococcota
Deinococcus sp. UR1 [LIYN]
6041
6117
+
Pro
GGG
[ENA]
¡û
>W1610737919
LMOM01000065
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
319166
319090
-
Pro
GGG
[ENA]
¡û
>W1710059278
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
3759
3683
-
Pro
GGG
[ENA]
¡û
>W1710542301
FNZA01000054
Deinococcota
Deinococcus reticulitermitis [FNZA]
1526
1602
+
Pro
GGG
[ENA]
¡û
>W1710605348
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
180172
180096
-
Pro
GGG
[ENA]
¡û
>W1710774893
LIYN01000330
Deinococcota
Deinococcus sp. UR1 [LIYN]
6041
6117
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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