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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176819 (21 seq.)
>W1710875548
LMOM01000012
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
71551
71627
+
Pro
TGG
[ENA]
¡û
>W1711743907
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
1257986
1258062
+
Pro
TGG
[ENA]
¡û
>W1712080665
NHMK01000014
Deinococcota
Deinococcus indicus [NHMK]
238029
238105
+
Pro
TGG
[ENA]
¡û
>WENV181223650
OFDC01058207
[OFDC] hot springs metagenome; Water
272
348
+
Pro
TGG
[ENA]
¢þ
>C181185120
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
126812
126736
-
Pro
TGG
-
¡û
>W09102013
AAHE01000007
Deinococcota
Deinococcus geothermalis DSM 11300 [AAHE]
7491
7567
+
Pro
TGG
[ENA]
¡û
>C09103921
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
166745
166669
-
Pro
TGG
[Ensembl]
¡û
>W1911788270
QYCQ01000119
Deinococcota
Deinococcus sp. RM [QYCQ]
2173
2097
-
Pro
TGG
[ENA]
¡û
>W1911802520
QYUJ01000014
Deinococcota
Deinococcus cavernae K2S05-167 [QYUJ]
950182
950106
-
Pro
TGG
[ENA]
¡û
>W1810003551
BFAG01000012
Deinococcota
Deinococcus aerius TR0125 [BFAG]
136247
136171
-
Pro
TGG
[ENA]
¡û
>W1810423341
PYSV01000010
Deinococcota
Deinococcus arcticus OD32 [PYSV]
2030
1954
-
Pro
TGG
[ENA]
¡û
>C151081907
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
1937836
1937760
-
Pro
TGG
[Ensembl]
¡û
>C11107240
CP002536
Deinococcota
Deinococcus proteolyticus MRP [CP002536]
1598335
1598259
-
Pro
TGG
[Ensembl]
¡û
>C121002079
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
2594816
2594740
-
Pro
TGG
[Ensembl]
¡û
>C161061625
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
129213
129137
-
Pro
TGG
[Ensembl]
¡û
>W1610061584
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
3197070
3197146
+
Pro
TGG
[ENA]
¡û
>W1610638972
LIYN01000003
Deinococcota
Deinococcus sp. UR1 [LIYN]
6709
6785
+
Pro
TGG
[ENA]
¡û
>W1610737894
LMOM01000012
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
71551
71627
+
Pro
TGG
[ENA]
¡û
>W1710059249
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
3197070
3197146
+
Pro
TGG
[ENA]
¡û
>W1710605349
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
97528
97452
-
Pro
TGG
[ENA]
¡û
>W1710774866
LIYN01000003
Deinococcota
Deinococcus sp. UR1 [LIYN]
6709
6785
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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