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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176904 (137 seq.)
>W1711736329
MUAB01000014
Gammaproteobacteria
Escherichia coli [MUAB]
35486
35562
+
Arg
CCG
[ENA]
¡û
>C171002986
CP010117
Gammaproteobacteria
Escherichia coli C2 [CP010117]
3484607
3484531
-
Arg
CCG
-
¡û
>C171004012
CP010145
Gammaproteobacteria
Escherichia coli D5 [CP010145]
3380098
3380174
+
Arg
CCG
-
¡û
>C171006679
CP010231
Gammaproteobacteria
Escherichia coli S30 [CP010231]
3271072
3271148
+
Arg
CCG
-
¡û
>C171007640
CP011124
Gammaproteobacteria
Escherichia coli USML2 [CP011124]
890404
890328
-
Arg
CCG
-
¡û
>C171054205
CP016948
Gammaproteobacteria
Serratia surfactantfaciens YD25 [CP016948]
4630183
4630259
+
Arg
CCG
-
¡û
>C171087680
CP019000
Gammaproteobacteria
Escherichia coli Ecol_AZ153 [CP019000]
3259794
3259870
+
Arg
CCG
-
¡û
>C171104566
CP020107
Gammaproteobacteria
Escherichia coli 13E0767 [CP020107]
179959
180035
+
Arg
CCG
-
¡û
>WENV183772423
PPYF01016864
[PPYF] human gut metagenome; stool from patient with Crohn's disease
29013
28937
-
Arg
CCG
[ENA]
¢þ
>C121002380
CP002295
Gammaproteobacteria
Serratia symbiotica str. 'Cinara cedri' [CP002295]
1580168
1580093
-
Arg
CCG
[Ensembl]
¡û
>C161028745
CP010829
Gammaproteobacteria
Shigella sonnei FORC_011 [CP010829]
4194796
4194872
+
Arg
CCG
-
¡û
>C161039905
CP012140
Gammaproteobacteria
Shigella flexneri 4c 1205 [CP012140]
4063446
4063522
+
Arg
CCG
-
¡û
>C161050100
CP013046
Gammaproteobacteria
Serratia marcescens B3R3 [CP013046]
622331
622407
+
Arg
CCG
[Ensembl]
¡û
>C161058825
CP013662
Gammaproteobacteria
Escherichia coli 08-00022 [CP013662]
4499640
4499716
+
Arg
CCG
-
¡û
>C161070231
CP014272
Gammaproteobacteria
Escherichia coli K-12 C3026 [CP014272]
4086359
4086435
+
Arg
CCG
-
¡û
>C161085022
CP015227
Gammaproteobacteria
Enterobacter sp. ODB01 [CP015227]
1307428
1307352
-
Arg
CCG
-
¡û
>C161085180
CP015229
Gammaproteobacteria
Escherichia coli 06-00048 [CP015229]
4794553
4794629
+
Arg
CCG
[Ensembl]
¡û
>C161093737
CP016034
Gammaproteobacteria
Escherichia coli [CP016034]
3997990
3998066
+
Arg
CCG
-
¡û
>C161103302
FP929040
Gammaproteobacteria
Enterobacter hormaechei NCTC 9394 [FP929040]
217976
217900
-
Arg
CCG
-
¡û
>W1610006674
AMJT01000147
Gammaproteobacteria
Shigella flexneri S6585 [AMJT]
76590
76666
+
Arg
CCG
[ENA]
¡û
>W1610007757
AMKF01000086
Gammaproteobacteria
Shigella flexneri MT1457 [AMKF]
65893
65817
-
Arg
CCG
[ENA]
¡û
>W1610008324
AMKL01000065
Gammaproteobacteria
Shigella sonnei 09-4962 [AMKL]
427771
427847
+
Arg
CCG
[ENA]
¡û
>W1610020713
ASRI01000040
Gammaproteobacteria
Escherichia coli NCTC 50110 [ASRI]
45024
44948
-
Arg
CCG
[ENA]
¡û
>W1610021666
ATLX01000013
Gammaproteobacteria
Escherichia coli NCCP 15656 [ATLX]
307576
307652
+
Arg
CCG
[ENA]
¡û
>W1610054161
BBUR01000014
Gammaproteobacteria
Escherichia coli O119:H6 [BBUR]
66666
66590
-
Arg
CCG
[ENA]
¡û
>W1610055167
BBVJ01000052
Gammaproteobacteria
Escherichia albertii [BBVJ]
19021
19097
+
Arg
CCG
[ENA]
¡û
>W1610055703
BBVS01000018
Gammaproteobacteria
Escherichia albertii [BBVS]
64745
64669
-
Arg
CCG
[ENA]
¡û
>W1610056139
BBVZ01000015
Gammaproteobacteria
Escherichia albertii [BBVZ]
57159
57083
-
Arg
CCG
[ENA]
¡û
>W1610186234
FBSE01000049
Gammaproteobacteria
Escherichia coli [FBSE]
35427
35503
+
Arg
CCG
[ENA]
¡û
>W1610190530
FCFE01000004
Gammaproteobacteria
Serratia marcescens [FCFE]
191253
191329
+
Arg
CCG
[ENA]
¡û
>W1610191301
FCFP01000005
Gammaproteobacteria
Serratia marcescens [FCFP]
90725
90649
-
Arg
CCG
[ENA]
¡û
>W1610195702
FCHZ01000006
Gammaproteobacteria
Serratia marcescens [FCHZ]
91380
91304
-
Arg
CCG
[ENA]
¡û
>W1610196133
FCIF01000006
Gammaproteobacteria
Serratia marcescens [FCIF]
194231
194307
+
Arg
CCG
[ENA]
¡û
>W1610197129
FCIT01000008
Gammaproteobacteria
Serratia marcescens [FCIT]
210086
210162
+
Arg
CCG
[ENA]
¡û
>W1610197413
FCIX01000006
Gammaproteobacteria
Serratia marcescens [FCIX]
90546
90470
-
Arg
CCG
[ENA]
¡û
>W1610198777
FCJQ01000007
Gammaproteobacteria
Serratia marcescens [FCJQ]
110567
110643
+
Arg
CCG
[ENA]
¡û
>W1610200031
FCKI01000004
Gammaproteobacteria
Serratia marcescens [FCKI]
89909
89833
-
Arg
CCG
[ENA]
¡û
>W1610202389
FCLP01000009
Gammaproteobacteria
Serratia marcescens [FCLP]
90622
90546
-
Arg
CCG
[ENA]
¡û
>W1610202736
FCLU01000005
Gammaproteobacteria
Serratia marcescens [FCLU]
193501
193577
+
Arg
CCG
[ENA]
¡û
>W1610204000
FCMM01000004
Gammaproteobacteria
Serratia marcescens [FCMM]
194712
194788
+
Arg
CCG
[ENA]
¡û
>W1610438706
FJWW01000010
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJWW]
97773
97849
+
Arg
CCG
[ENA]
¡û
>W1610438797
FJWY01000001
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJWY]
65141
65065
-
Arg
CCG
[ENA]
¡û
>W1610439979
FJXO01000005
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJXO]
72238
72162
-
Arg
CCG
[ENA]
¡û
>W1610440261
FJXS01000009
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJXS]
92224
92148
-
Arg
CCG
[ENA]
¡û
>W1610441040
FJYD01000006
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJYD]
67432
67356
-
Arg
CCG
[ENA]
¡û
>W1610442055
FJYR01000005
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJYR]
231397
231473
+
Arg
CCG
[ENA]
¡û
>W1610442904
FJZD01000006
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJZD]
233052
233128
+
Arg
CCG
[ENA]
¡û
>W1610443338
FJZJ01000007
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJZJ]
231397
231473
+
Arg
CCG
[ENA]
¡û
>W1610444158
FJZV01000006
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJZV]
236700
236776
+
Arg
CCG
[ENA]
¡û
>W1610444390
FJZY01000006
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJZY]
246817
246893
+
Arg
CCG
[ENA]
¡û
>W1610445349
FKAM01000009
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKAM]
145513
145589
+
Arg
CCG
[ENA]
¡û
>W1610445924
FKAU01000006
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKAU]
260340
260416
+
Arg
CCG
[ENA]
¡û
>W1610446415
FKBB01000027
Gammaproteobacteria
Enterobacter roggenkampii cloacae [FKBB]
22764
22840
+
Arg
CCG
[ENA]
¡û
>W1610448779
FKCJ01000006
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKCJ]
231397
231473
+
Arg
CCG
[ENA]
¡û
>W1610449550
FKCU01000008
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKCU]
66834
66758
-
Arg
CCG
[ENA]
¡û
>W1610450339
FKDF01000012
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKDF]
79213
79289
+
Arg
CCG
[ENA]
¡û
>W1610451359
FKDU01000004
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKDU]
213438
213514
+
Arg
CCG
[ENA]
¡û
>W1610452384
FKEI01000010
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKEI]
97786
97862
+
Arg
CCG
[ENA]
¡û
>W1610452711
FKEN01000002
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKEN]
65173
65097
-
Arg
CCG
[ENA]
¡û
>W1610454815
FKFQ01000016
Gammaproteobacteria
Enterobacter cloacae [FKFQ]
48690
48614
-
Arg
CCG
[ENA]
¡û
>W1610456103
FKGJ01000005
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKGJ]
231423
231499
+
Arg
CCG
[ENA]
¡û
>W1610459090
FKIA01000007
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKIA]
67071
66995
-
Arg
CCG
[ENA]
¡û
>W1610459997
FKIU01000004
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKIU]
226539
226615
+
Arg
CCG
[ENA]
¡û
>W1610502046
FLKS01000067
Gammaproteobacteria
Escherichia coli [FLKS]
40154
40230
+
Arg
CCG
[ENA]
¡û
>W1610503404
FLMV01000030
Gammaproteobacteria
Escherichia coli [FLMV]
57725
57649
-
Arg
CCG
[ENA]
¡û
>W1610515573
FMBC01000019
Gammaproteobacteria
Kosakonia oryziphila oryziphilus [FMBC]
34975
35051
+
Arg
CCG
[ENA]
¡û
>W1610523966
JOLW01000028
Gammaproteobacteria
Cronobacter sakazakii [JOLW]
33332
33408
+
Arg
CCG
[ENA]
¡û
>W1610524117
JOLY01000022
Gammaproteobacteria
Cronobacter sakazakii [JOLY]
55837
55761
-
Arg
CCG
[ENA]
¡û
>W1610524198
JOLZ01000032
Gammaproteobacteria
Cronobacter sakazakii [JOLZ]
33324
33400
+
Arg
CCG
[ENA]
¡û
>W1610535662
JRRR01000046
Gammaproteobacteria
Escherichia coli [JRRR]
293
217
-
Arg
CCG
[ENA]
¡û
>W1610550788
JXUH01000093
Gammaproteobacteria
Escherichia coli [JXUH]
35505
35581
+
Arg
CCG
[ENA]
¡û
>W1610551299
JYHP01000064
Gammaproteobacteria
Escherichia coli [JYHP]
35463
35539
+
Arg
CCG
[ENA]
¡û
>W1610596622
LECR01000073
Gammaproteobacteria
Sodalis-like endosymbiont of Proechinophthirus fluctus [LECR]
9078
9002
-
Arg
CCG
[ENA]
¡û
>W1610598737
LFID01000001
Gammaproteobacteria
Escherichia coli [LFID]
57071
56995
-
Arg
CCG
[ENA]
¡û
>W1610611034
LGBG01000020
Gammaproteobacteria
Escherichia coli [LGBG]
35416
35492
+
Arg
CCG
[ENA]
¡û
>W1610618287
LHAJ01000051
Gammaproteobacteria
Escherichia coli [LHAJ]
31179
31255
+
Arg
CCG
[ENA]
¡û
>W1610666743
LJYD01000013
Gammaproteobacteria
Escherichia coli [LJYD]
35122
35198
+
Arg
CCG
[ENA]
¡û
>W1610758784
LNII01000130
Gammaproteobacteria
Enterobacter sp. 50793107 [LNII]
47400
47324
-
Arg
CCG
[ENA]
¡û
>W1610759165
LNIO01000052
Gammaproteobacteria
Enterobacter sp. 50858885 [LNIO]
215166
215242
+
Arg
CCG
[ENA]
¡û
>W1610781814
LOCS01000111
Gammaproteobacteria
Escherichia coli [LOCS]
56588
56512
-
Arg
CCG
[ENA]
¡û
>W1610782363
LOCZ01000021
Gammaproteobacteria
Escherichia coli [LOCZ]
35576
35652
+
Arg
CCG
[ENA]
¡û
>W1610782564
LODB01000113
Gammaproteobacteria
Escherichia coli [LODB]
52936
52860
-
Arg
CCG
[ENA]
¡û
>W1610785770
LOFT01000030
Gammaproteobacteria
Escherichia coli [LOFT]
5509
5433
-
Arg
CCG
[ENA]
¡û
>W1610795681
LONR01000017
Gammaproteobacteria
Escherichia coli [LONR]
35641
35717
+
Arg
CCG
[ENA]
¡û
>W1610795974
LONV01000039
Gammaproteobacteria
Escherichia coli [LONV]
51065
50989
-
Arg
CCG
[ENA]
¡û
>W1610798162
LOOX01000076
Gammaproteobacteria
Escherichia coli [LOOX]
21807
21883
+
Arg
CCG
[ENA]
¡û
>W1610801905
LORS01000001
Gammaproteobacteria
Escherichia coli fergusonii [LORS]
356712
356636
-
Arg
CCG
[ENA]
¡û
>W1610837960
LPPQ01000001
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LPPQ]
260274
260350
+
Arg
CCG
[ENA]
¡û
>W1610838051
LPPR01000034
Gammaproteobacteria
Enterobacter hormaechei [LPPR]
208209
208285
+
Arg
CCG
[ENA]
¡û
>W1610848024
LPYS01000169
Gammaproteobacteria
Escherichia coli [LPYS]
56385
56309
-
Arg
CCG
[ENA]
¡û
>W1610849067
LPZF01000151
Gammaproteobacteria
Escherichia coli [LPZF]
56659
56583
-
Arg
CCG
[ENA]
¡û
>W1610859619
LQRZ01000079
Gammaproteobacteria
Escherichia coli [LQRZ]
34632
34708
+
Arg
CCG
[ENA]
¡û
>W1610860923
LQSW01000090
Gammaproteobacteria
Escherichia coli [LQSW]
35478
35554
+
Arg
CCG
[ENA]
¡û
>W1610861557
LQTH01000238
Gammaproteobacteria
Escherichia coli [LQTH]
9096
9020
-
Arg
CCG
[ENA]
¡û
>W1610862762
LQUC01000201
Gammaproteobacteria
Escherichia coli [LQUC]
2949
2873
-
Arg
CCG
[ENA]
¡û
>W1610863151
LQUJ01000090
Gammaproteobacteria
Escherichia coli [LQUJ]
28557
28481
-
Arg
CCG
[ENA]
¡û
>W1610863380
LQUN01000295
Gammaproteobacteria
Escherichia coli [LQUN]
34629
34705
+
Arg
CCG
[ENA]
¡û
>W1610864881
LQVN01000265
Gammaproteobacteria
Escherichia coli [LQVN]
4189
4113
-
Arg
CCG
[ENA]
¡û
>W1610865553
LQVZ01000197
Gammaproteobacteria
Escherichia coli [LQVZ]
34763
34839
+
Arg
CCG
[ENA]
¡û
>W1610866097
LQWJ01000024
Gammaproteobacteria
Escherichia coli [LQWJ]
31223
31299
+
Arg
CCG
[ENA]
¡û
>W1610873534
LRBZ01000001
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LRBZ]
105104
105180
+
Arg
CCG
[ENA]
¡û
>W1610874484
LRCQ01000031
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LRCQ]
47348
47272
-
Arg
CCG
[ENA]
¡û
>W1610874583
LRCS01000001
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LRCS]
96467
96391
-
Arg
CCG
[ENA]
¡û
>W1610882873
LRIW01000068
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LRIW]
190397
190473
+
Arg
CCG
[ENA]
¡û
>W1610883633
LRJJ01000006
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LRJJ]
86547
86623
+
Arg
CCG
[ENA]
¡û
>W1610883738
LRJK01000066
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LRJK]
85408
85484
+
Arg
CCG
[ENA]
¡û
>W1610883791
LRJL01000053
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LRJL]
235102
235178
+
Arg
CCG
[ENA]
¡û
>W1610898719
LRWH01000001
Gammaproteobacteria
Escherichia coli [LRWH]
74690
74614
-
Arg
CCG
[ENA]
¡û
>W1610899469
LRWQ01000110
Gammaproteobacteria
Escherichia coli [LRWQ]
56575
56499
-
Arg
CCG
[ENA]
¡û
>W1610899873
LRWV01000286
Gammaproteobacteria
Escherichia coli [LRWV]
56570
56494
-
Arg
CCG
[ENA]
¡û
>W1610900113
LRWZ01000061
Gammaproteobacteria
Escherichia coli [LRWZ]
74684
74608
-
Arg
CCG
[ENA]
¡û
>W1610901315
LRXR01000025
Gammaproteobacteria
Escherichia coli [LRXR]
78768
78692
-
Arg
CCG
[ENA]
¡û
>W1610901762
LRXX01000055
Gammaproteobacteria
Escherichia coli [LRXX]
34627
34703
+
Arg
CCG
[ENA]
¡û
>W1610906152
LSBS01000351
Gammaproteobacteria
Escherichia coli [LSBS]
8386
8310
-
Arg
CCG
[ENA]
¡û
>W1610908789
LSEQ01000067
Gammaproteobacteria
Escherichia coli [LSEQ]
34921
34997
+
Arg
CCG
[ENA]
¡û
>W1610909355
LSEY01000043
Gammaproteobacteria
Escherichia coli [LSEY]
34740
34816
+
Arg
CCG
[ENA]
¡û
>W1610910685
LSGT01000111
Gammaproteobacteria
Escherichia coli [LSGT]
34915
34991
+
Arg
CCG
[ENA]
¡û
>W1610921875
LSUU01000031
Gammaproteobacteria
Escherichia coli [LSUU]
35690
35766
+
Arg
CCG
[ENA]
¡û
>W1610957439
LVJA01000033
Gammaproteobacteria
Shigella flexneri [LVJA]
2371
2295
-
Arg
CCG
[ENA]
¡û
>W1610962541
LVMT01000502
Gammaproteobacteria
Escherichia coli [LVMT]
25177
25253
+
Arg
CCG
[ENA]
¡û
>W1610962774
LVMW01000153
Gammaproteobacteria
Escherichia coli [LVMW]
35529
35605
+
Arg
CCG
[ENA]
¡û
>W1610965018
LVNZ01000099
Gammaproteobacteria
Escherichia coli [LVNZ]
35505
35581
+
Arg
CCG
[ENA]
¡û
>W1610966477
LVOS01000102
Gammaproteobacteria
Escherichia coli [LVOS]
35495
35571
+
Arg
CCG
[ENA]
¡û
>W1610967414
LVPE01000047
Gammaproteobacteria
Escherichia coli [LVPE]
35452
35528
+
Arg
CCG
[ENA]
¡û
>W1610973088
LVSJ01000187
Gammaproteobacteria
Escherichia coli [LVSJ]
34763
34839
+
Arg
CCG
[ENA]
¡û
>W1610976303
LVUQ01000014
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LVUQ]
27179
27255
+
Arg
CCG
[ENA]
¡û
>W1610976405
LVUS01000011
Gammaproteobacteria
Enterobacter cloacae subsp. dissolvens [LVUS]
32754
32830
+
Arg
CCG
[ENA]
¡û
>W1610976954
LVVC01000012
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LVVC]
228140
228216
+
Arg
CCG
[ENA]
¡û
>W1610982212
LWDB01000010
Gammaproteobacteria
Proteus mirabilis [LWDB]
149881
149805
-
Arg
CCG
[ENA]
¡û
>W1611010239
LXVD01000060
Gammaproteobacteria
Shigella sonnei [LXVD]
17759
17683
-
Arg
CCG
[ENA]
¡û
>W1611015409
LYEG01000518
Gammaproteobacteria
Shigella sonnei [LYEG]
22479
22555
+
Arg
CCG
[ENA]
¡û
>W1611052937
MAIV01000025
Gammaproteobacteria
Escherichia coli [MAIV]
19888
19812
-
Arg
CCG
[ENA]
¡û
>W1611065855
MBPV01000017
Gammaproteobacteria
Escherichia coli [MBPV]
50617
50541
-
Arg
CCG
[ENA]
¡û
>W1611065955
MBPW01000051
Gammaproteobacteria
Escherichia coli [MBPW]
43917
43841
-
Arg
CCG
[ENA]
¡û
>W1611066661
MBRL01000216
Gammaproteobacteria
Escherichia coli [MBRL]
52861
52785
-
Arg
CCG
[ENA]
¡û
>W1611067663
MCGF01000009
Gammaproteobacteria
Enterobacter ludwigii [MCGF]
32731
32807
+
Arg
CCG
[ENA]
¡û
>W1710717627
LECR01000073
Gammaproteobacteria
Sodalis-like endosymbiont of Proechinophthirus fluctus [LECR]
9078
9002
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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