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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176936 (12 seq.)
>W1710777953
LJCG01000030
Gammaproteobacteria
Escherichia coli [LJCG]
11535
11611
+
Ser
GGA
[ENA]
¡û
>W141257296
CBWI010000247
Gammaproteobacteria
Klebsiella pneumoniae IS33 [CBWI]
112177
112253
+
Phe
GAA
[ENA]
¡û
>WENV182948437
OKVO01000234
[OKVO] human gut metagenome; human gut
3115
3039
-
Phe
GAA
[ENA]
¡û
>SRA1004659
SRR006906.96109
metagenomic water samples (SRP000427)
67
143
+
Phe
GAA
[SRA]
>W2010152101
CAADIY010000007
Gammaproteobacteria
Serratia liquefaciens NCTC12962 [CAADIY]
1073618
1073542
-
Phe
GAA
[ENA]
¡û
>C201229341
CP049877
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Adjame 400321 [CP049877]
237605
237529
-
Phe
GAA
-
¡û
>C201229502
CP049879
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Adjame 409960 [CP049879]
705164
705088
-
Phe
GAA
-
¡û
>C201229741
CP049882
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Adjame 434304 [CP049882]
153717
153641
-
Phe
GAA
-
¡û
>C201285266
CP055158
Gammaproteobacteria
Escherichia coli SCU-321 [CP055158]
1637512
1637436
-
Phe
GAA
-
¡û
>C10114543
CP001593
Gammaproteobacteria
Yersinia pestis Z176003 [CP001593]
403041
402965
-
Phe
GAA
[Ensembl]
¡û
>W1730037321
MYKY01000141
Gammaproteobacteria
Salmonella enterica [MYKY]
7991
7916
-
Phe
GAA
[ENA]
¡û
>W1710722237
LFNX01001047
Gammaproteobacteria
Klebsiella pneumoniae [LFNX]
14219
14295
+
Ser
NGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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