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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177081 (38 seq.)
>W1711422940
MIBW01000015
Campylobacterota
Sulfurimonas sp. GWF2_37_8 [MIBW]
25101
25025
-
Arg
TCG
[ENA]
¡û
>W1711584532
MNYP01000091
Campylobacterota
Helicobacteraceae bacterium CG2_30_36_10 [MNYP]
1084
1008
-
Arg
TCG
[ENA]
¡û
>WENV180241962
OBDI01037928
[OBDI] metagenome; diffuse fluid
189
265
+
Arg
TCG
[ENA]
¡û
>WENV180277096
OBHV01058405
[OBHV] metagenome; water
232
156
-
Arg
TCG
[ENA]
¡û
>WENV180288345
OBIL01131673
[OBIL] metagenome; hydrothermal vent
173
97
-
Arg
TCG
[ENA]
¡û
>WENV180299723
OBJC01098342
[OBJC] metagenome; water
166
90
-
Arg
TCG
[ENA]
¡û
>WENV180581540
OCMK01003240
[OCMK] metagenome; diffuse fluid
149
73
-
Arg
TCG
[ENA]
¡û
>WENV180582203
OCMO01012976
[OCMO] metagenome; diffuse fluid
191
267
+
Arg
TCG
[ENA]
¡û
>WENV180582837
OCMR01095834
[OCMR] metagenome; diffuse fluid
47
123
+
Arg
TCG
[ENA]
¡û
>WENV180583269
OCNB01019482
[OCNB] metagenome; diffuse fluid
185
261
+
Arg
TCG
[ENA]
¡û
>WENV180634370
OCRB01004421
[OCRB] metagenome; diffuse fluid
456
380
-
Arg
TCG
[ENA]
¡û
>WENV180647933
OCSI01027322
[OCSI] metagenome; diffuse fluid
377
301
-
Arg
TCG
[ENA]
¡û
>W141083617
AUPZ01000010
Campylobacterota
Sulfurimonas hongkongensis AST-10 [AUPZ]
104231
104155
-
Arg
TCG
[ENA]
¡û
>WENV181209068
OFBD01003904
[OFBD] metagenome; hydrothermal vent
1176
1252
+
Arg
TCG
[ENA]
¡û
>WENV181209539
OFBE01007854
[OFBE] metagenome; hydrothermal vent
688
612
-
Arg
TCG
[ENA]
¡û
>WENV181210175
OFBG01007977
[OFBG] metagenome; hydrothermal vent
570
646
+
Arg
TCG
[ENA]
¡û
>WENV181210579
OFBH01011959
[OFBH] metagenome; hydrothermal vent
369
293
-
Arg
TCG
[ENA]
¡û
>WENV181211250
OFBK01000290
[OFBK] metagenome; hydrothermal vent
597
673
+
Arg
TCG
[ENA]
¡û
>WENV181211937
OFBM01002058
[OFBM] metagenome; hydrothermal vent
464
388
-
Arg
TCG
[ENA]
¡û
>WENV181213054
OFBU01006830
[OFBU] metagenome; hydrothermal vent
1068
993
-
Arg
TCG
[ENA]
¡û
>WENV181213876
OFBW01001464
[OFBW] metagenome; hydrothermal vent
1533
1457
-
Arg
TCG
[ENA]
¡û
>WENV181224035
OFDD01010906
[OFDD] metagenome; hydrothermal vent
384
308
-
Arg
TCG
[ENA]
¡û
>WENV181225123
OFDH01005233
[OFDH] metagenome; hydrothermal vent
167
91
-
Arg
TCG
[ENA]
¡û
>WENV181228291
OFDO01008418
[OFDO] metagenome; hydrothermal vent
513
437
-
Arg
TCG
[ENA]
¡û
>WENV170575593
FPHF01000011
[FPHF] hydrothermal vent metagenome genome assembly, contig: NODE_21.; water
74549
74473
-
Arg
TCG
[ENA]
¡û
>WENV170598641
FUWD010042847
[FUWD] metagenome; unknown
9
85
+
Arg
TCG
[ENA]
¡û
>WENV170695803
LGVE01173674
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
222
146
-
Arg
TCG
[ENA]
¡û
>WENV170704270
LLEJ01001046
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1265
1341
+
Arg
TCG
[ENA]
¡û
>W09111600
ABXD01000011
Campylobacterota
Sulfurimonas gotlandica GD 1 [ABXD]
11554
11478
-
Arg
TCG
[ENA]
¡û
>W2011544815
SDID01000018
Campylobacterota
Sulfurimonas sp. NW8N [SDID]
24052
24128
+
Arg
TCG
[ENA]
¡û
>C211052418
CP041165
Campylobacterota
Sulfurimonas sp. B2 [CP041165]
161431
161507
+
Arg
TCG
-
¡û
>C211052499
CP041235
Campylobacterota
Sulfurimonas sp. S2-6 [CP041235]
193700
193624
-
Arg
TCG
-
¡û
>C211052676
CP041406
Campylobacterota
Sulfurimonas paralvinellae GO25 [CP041406]
137750
137674
-
Arg
TCG
-
¡û
>C211066012
CP046072
Campylobacterota
Sulfurimonas sp. H1576 [CP046072]
243105
243029
-
Arg
TCG
-
¡û
>C231194043
CP084578
Campylobacterota
Sulfurimonas sp. SWIR-19 [CP084578]
191493
191417
-
Arg
TCG
-
¡û
>C241042988
CP035534
Campylobacterota
Sulfurimonas hydrogeniphila NW10 [CP035534]
2149867
2149943
+
Arg
TCG
-
¡û
>C11119357
CP002205
Campylobacterota
Sulfurimonas autotrophica DSM 16294 [CP002205]
189104
189028
-
Arg
TCG
[Ensembl]
¡û
>W121004895
AFRZ01000001
Campylobacterota
Sulfurimonas gotlandica GD1 [AFRZ]
1021582
1021506
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK