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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177126 (36 seq.)
>W131205861
ATFD01000015
Spirochaetota
Treponema socranskii subsp. paredis ATCC 35535 [ATFD]
136268
136195
-
Ala
GGC
[ENA]
¡û
>WENV180006073
FLRX01131158
[FLRX] metagenome; saliva
430
356
-
Ala
GGC
[ENA]
¡û
>WENV180676105
OCVV011361649
[OCVV] gut metagenome; gut
74530
74456
-
Ala
GGC
[ENA]
¡û
>WENV180676108
OCVV011361649
[OCVV] gut metagenome; gut
74530
74456
-
Ala
GGC
[ENA]
¡û
>WENV180721945
ODGL01035080
[ODGL] human metagenome; G_DNA_Subgingival plaque
273
346
+
Ala
GGC
[ENA]
¡û
>WENV180727951
ODGU01017881
[ODGU] human metagenome; G_DNA_Supragingival plaque
218
145
-
Ala
GGC
[ENA]
¡û
>WENV180735230
ODGZ01105933
[ODGZ] human metagenome; G_DNA_Supragingival plaque
38
111
+
Ala
GGC
[ENA]
¡û
>WENV180751548
ODHS01070106
[ODHS] human metagenome; G_DNA_Supragingival plaque
413
340
-
Ala
GGC
[ENA]
¡û
>WENV180765188
ODIB01035414
[ODIB] human metagenome; G_DNA_Supragingival plaque
402
475
+
Ala
GGC
[ENA]
¡û
>WENV180769329
ODIG01056601
[ODIG] human metagenome; G_DNA_Tongue dorsum
268
195
-
Ala
GGC
[ENA]
¡û
>WENV180787798
ODIS01016295
[ODIS] human metagenome; G_DNA_Supragingival plaque
419
492
+
Ala
GGC
[ENA]
¡û
>WENV180788864
ODIS01134851
[ODIS] human metagenome; G_DNA_Supragingival plaque
98
173
+
Ala
GGC
[ENA]
¡û
>WENV180797601
ODJB01084880
[ODJB] human metagenome; G_DNA_Supragingival plaque
656
581
-
Ala
GGC
[ENA]
¡û
>WENV180844437
ODKN01117671
[ODKN] human metagenome; G_DNA_Supragingival plaque
206
279
+
Ala
GGC
[ENA]
¡û
>W141091794
AUZJ01000009
Spirochaetota
Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 [AUZJ]
102572
102645
+
Ala
GGC
[ENA]
¡û
>WENV180944335
ODUC01014035
[ODUC] human metagenome; G_DNA_Supragingival plaque
1368
1295
-
Ala
GGC
[ENA]
¡û
>WENV180952069
ODUH01112247
[ODUH] human metagenome; G_DNA_Subgingival plaque
314
239
-
Ala
GGC
[ENA]
¡û
>WENV180975240
ODUY01003393
[ODUY] human metagenome; G_DNA_Supragingival plaque
519
446
-
Ala
GGC
[ENA]
¡û
>WENV180999340
ODVT01013866
[ODVT] human metagenome; G_DNA_Buccal mucosa
1143
1070
-
Ala
GGC
[ENA]
¡û
>WENV181077441
OEAP01058892
[OEAP] human metagenome; G_DNA_Supragingival plaque
561
488
-
Ala
GGC
[ENA]
¡û
>WENV181080232
OEAS01033859
[OEAS] human metagenome; G_DNA_Supragingival plaque
135
210
+
Ala
GGC
[ENA]
¡û
>WENV181084149
OEAV01079247
[OEAV] human metagenome; G_DNA_Supragingival plaque
111
186
+
Ala
GGC
[ENA]
¡û
>W141107076
AVQI01000050
Spirochaetota
Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 [AVQI]
84698
84771
+
Ala
GGC
[ENA]
¡û
>WENV181091727
OEBC01077709
[OEBC] human metagenome; G_DNA_Supragingival plaque
158
85
-
Ala
GGC
[ENA]
¡û
>WENV182524285
OIWT01000115
[OIWT] human gut metagenome; faeces
53408
53481
+
Ala
GGC
[ENA]
¡û
>WENV182527339
OIWU01000188
[OIWU] human gut metagenome; faeces
50730
50803
+
Ala
GGC
[ENA]
¡û
>WENV183642153
OQVN01000081
[OQVN] human gut metagenome; human gut
36209
36282
+
Ala
GGC
[ENA]
¡û
>WENV183658094
OQWM01000262
[OQWM] human gut metagenome; human gut
6280
6353
+
Ala
GGC
[ENA]
¡û
>W2110250912
JACSET010000001
Spirochaetota
Treponema sp. Marseille-Q4130 [JACSET]
230111
230184
+
Ala
GGC
[ENA]
¡û
>W2110492774
JAFEVM010000004
Spirochaetota
Treponema sp. Marseille-Q4523 [JAFEVM]
4683
4758
+
Ala
GGC
[ENA]
¡û
>C201314786
LR796240
Spirochaetota
Treponema socranskii subsp. buccale Marseille-CSURQ0203 [LR796240]
168848
168921
+
Ala
GGC
-
¡û
>C211095732
CP054142
Spirochaetota
Treponema parvum ATCC 700770 [CP054142]
138621
138548
-
Ala
GGC
-
¡û
>C211096347
CP054257
Spirochaetota
Treponema parvum ATCC 700773 [CP054257]
2507134
2507207
+
Ala
GGC
-
¡û
>C211116294
CP058315
Spirochaetota
Treponema parvum OMZ 843 [CP058315]
121975
121902
-
Ala
GGC
-
¡û
>C231070069
CP054258
Spirochaetota
Treponema socranskii subsp. buccale ATCC 35534 [CP054258]
2354464
2354391
-
Ala
GGC
-
¡û
>C11123103
CP002631
Spirochaetota
Treponema succinifaciens DSM 2489 [CP002631]
2595219
2595146
-
Ala
GGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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