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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177215 (33 seq.)
>W1711487715
MKGI01000075
Bacteroidota
Cloacibacterium normanense [MKGI]
73252
73169
-
Tyr
GTA
[ENA]
¡û
>W1711503229
MKTK01000011
Bacteroidota
Chryseobacterium sp. 39-10 [MKTK]
6329
6412
+
Tyr
GTA
[ENA]
¡û
>WENV180283620
OBID01001137
[OBID] metagenome; sludge
7036
7119
+
Tyr
GTA
[ENA]
¡û
>WENV181171425
OEIV010224653
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
162
79
-
Tyr
GTA
[ENA]
¡û
>WENV181834745
OGVG01000298
[OGVG] freshwater metagenome; freshwater
4579
4662
+
Tyr
GTA
[ENA]
¡û
>W141291530
JASZ01000012
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
4409
4492
+
Tyr
GTA
[ENA]
¡û
>WENV170010045
APMI01007416
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2234
2317
+
Tyr
GTA
[ENA]
¡û
>WENV170658328
JTFP01087748
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
645
728
+
Tyr
GTA
[ENA]
¡û
>C191116453
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
1207536
1207619
+
Tyr
GTA
-
¡û
>C191120377
CP034157
Bacteroidota
Cloacibacterium normanense NRS-1 [CP034157]
203699
203782
+
Tyr
GTA
-
¡û
>W1910933652
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
475536
475453
-
Tyr
GTA
[ENA]
¡û
>C09106199
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
271837
271920
+
Tyr
GTA
[Ensembl]
¡û
>W1810304715
PTPZ01000009
Bacteroidota
Cloacibacterium normanense IMET F [PTPZ]
58147
58064
-
Tyr
GTA
[ENA]
¡û
>W2010685536
JACEUX010000005
Bacteroidota
Chryseobacterium sp. cx-624 [JACEUX]
73519
73602
+
Tyr
GTA
[ENA]
¡û
>W2010699764
JACHFI010000006
Bacteroidota
Chryseobacterium koreense DSM 25209 [JACHFI]
9052
8969
-
Tyr
GTA
[ENA]
¡û
>W2010982288
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
475536
475453
-
Tyr
GTA
[ENA]
¡û
>W2011441472
RJTY01000051
Bacteroidota
Chryseobacterium haifense F4391 [RJTY]
43515
43432
-
Tyr
GTA
[ENA]
¡û
>W2110030833
BMLV01000003
Bacteroidota
Cloacibacterium rupense CGMCC 1.7656 [BMLV]
277077
276994
-
Tyr
GTA
[ENA]
¡û
>W2110259649
JACSPS010000001
Bacteroidota
Weeksellaceae bacterium Sa1CVA4 [JACSPS]
264109
264026
-
Tyr
GTA
[ENA]
¡û
>W2110556599
JAGJCA010000011
Bacteroidota
Chryseobacterium sp. cx-311 [JAGJCA]
82402
82485
+
Tyr
GTA
[ENA]
¡û
>C201150241
CP044507
Bacteroidota
Chryseobacterium sp. SNU WT7 [CP044507]
2251758
2251841
+
Tyr
GTA
-
¡û
>C201302673
CP059472
Bacteroidota
Chryseobacterium sp. cx-624 [CP059472]
1255555
1255638
+
Tyr
GTA
-
¡û
>C211298244
CP071953
Bacteroidota
Kaistella sp. PM-38 [CP071953]
1492946
1492863
-
Tyr
GTA
-
¡û
>W2110716204
JAJAFT010000001
Bacteroidota
Kaistella anthropi CCUG 52764 [JAJAFT]
511047
511130
+
Tyr
GTA
[ENA]
¡û
>C211424677
OU015319
Bacteroidota
Cloacibacterium caeni Isolate1 [OU015319]
1921264
1921181
-
Tyr
GTA
-
¡û
>C211424836
OU015321
Bacteroidota
Cloacibacterium caeni Isolate2 [OU015321]
1798882
1798799
-
Tyr
GTA
-
¡û
>W2110739935
JAJEWK010000003
Bacteroidota
Chryseobacterium sp. MFBS3-17 [JAJEWK]
143046
142963
-
Tyr
GTA
[ENA]
¡û
>C231241913
CP087583
Bacteroidota
Chryseobacterium faecale F4 [CP087583]
1815417
1815500
+
Tyr
GTA
-
¡û
>C231499006
CP104850
Bacteroidota
Cloacibacterium sp. TD35 [CP104850]
1200031
1200114
+
Tyr
GTA
-
¡û
>W1511685319
LFNG01000020
Bacteroidota
Chryseobacterium koreense CCUG 49689 [LFNG]
25732
25815
+
Tyr
GTA
[ENA]
¡û
>W1610095100
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
331384
331467
+
Tyr
GTA
[ENA]
¡û
>W1710097895
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
331384
331467
+
Tyr
GTA
[ENA]
¡û
>W1710525002
FNJE01000012
Bacteroidota
Cloacibacterium normanense [FNJE]
73249
73166
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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