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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177216 (29 seq.)
>W1711090638
LTAW01000003
Gammaproteobacteria
Marinomonas atlantica [LTAW]
486878
486954
+
Pro
GGG
[ENA]
¡û
>W1711090708
LTAX01000001
Gammaproteobacteria
Marinomonas gallaica [LTAX]
282
206
-
Pro
GGG
[ENA]
¡û
>w013308
AANE01000018
Gammaproteobacteria
Marinomonas sp. MED121 [AANE]
98061
97988
-
Pro
GGG
[ENA]
¡û
>WENV180042144
LNFX01000660
[LNFX] marine sediment metagenome; antarctic beach sand mud
410
334
-
Pro
GGG
[ENA]
¡û
>WENV180042190
LNFX01003478
[LNFX] marine sediment metagenome; antarctic beach sand mud
170
94
-
Pro
GGG
[ENA]
¡û
>W141191390
AYOZ01000008
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
264
188
-
Pro
GGG
[ENA]
¡û
>WENV170780915
MAAB01028366
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1508
1584
+
Pro
GGG
[ENA]
¡û
>W1810606184
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
267401
267477
+
Pro
GGG
[ENA]
¡û
>W1810625228
QHJF01000015
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
47237
47313
+
Pro
GGG
[ENA]
¡û
>W2010584390
JABAEK010000014
Gammaproteobacteria
Marinomonas sp. M1K-6 [JABAEK]
84757
84833
+
Pro
GGG
[ENA]
¡û
>W2010764308
JYBL01000001
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
618
542
-
Pro
GGG
[ENA]
¡û
>W2110030211
BMLJ01000011
Gammaproteobacteria
Marinomonas arctica CGMCC 1.6498 [BMLJ]
72271
72195
-
Pro
GGG
[ENA]
¡û
>W2110286842
JACYFC010000001
Gammaproteobacteria
Marinomonas colpomeniae SM2066 [JACYFC]
1115828
1115904
+
Pro
GGG
[ENA]
¡û
>C211142030
CP061081
Gammaproteobacteria
Marinomonas arctica BSI20414 [CP061081]
2540942
2540866
-
Pro
GGG
-
¡û
>C211155465
CP061941
Gammaproteobacteria
Marinomonas algicola SM1966 [CP061941]
1790127
1790203
+
Pro
GGG
-
¡û
>C231056895
CP047695
Gammaproteobacteria
Marinomonas mediterranea MMB-2 (IVIA-Po-186) [CP047695]
1684507
1684583
+
Pro
GGG
-
¡û
>C231129703
CP073013
Gammaproteobacteria
Marinomonas profundi M1K-6 [CP073013]
3176004
3176080
+
Pro
GGG
-
¡û
>C231130929
CP073343
Gammaproteobacteria
Marinomonas rhizomae MB12-11 [CP073343]
2492938
2492862
-
Pro
GGG
-
¡û
>C241166547
CP054301
Gammaproteobacteria
Marinomonas primoryensis MPKMM3633 [CP054301]
1690012
1690088
+
Pro
GGG
-
¡û
>C11114648
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
1731545
1731621
+
Pro
GGG
[Ensembl]
¡û
>W1511518552
JXYC01000058
Gammaproteobacteria
Marinomonas sp. S3726 [JXYC]
550
474
-
Pro
GGG
[ENA]
¡û
>W1610506641
FLRA01000018
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
119986
120062
+
Pro
GGG
[ENA]
¡û
>W1610506746
FLRB01000017
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
120002
120078
+
Pro
GGG
[ENA]
¡û
>W1610540145
JSEN01000016
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
67181
67257
+
Pro
GGG
[ENA]
¡û
>W1610540242
JSEO01000017
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
67181
67257
+
Pro
GGG
[ENA]
¡û
>W1610924878
LTAW01000003
Gammaproteobacteria
Marinomonas atlantica [LTAW]
486878
486954
+
Pro
GGG
[ENA]
¡û
>W1610924948
LTAX01000001
Gammaproteobacteria
Marinomonas gallaica [LTAX]
282
206
-
Pro
GGG
[ENA]
¡û
>W1710643166
JSEN01000016
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
67181
67257
+
Pro
GGG
[ENA]
¡û
>W1710643263
JSEO01000017
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
67181
67257
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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