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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177220 (31 seq.)
>W1710852993
LLWF02000018
Alphaproteobacteria
Roseomonas mucosa [LLWF]
39966
40042
+
Arg
TCT
[ENA]
¡û
>C171039544
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
1861476
1861552
+
Arg
TCT
-
¡û
>W141276642
JADY01000008
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
158570
158646
+
Arg
TCT
[ENA]
¡û
>C181102057
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
913655
913579
-
Arg
TCT
-
¡û
>W141558707
JHWD01000003
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
185710
185786
+
Arg
TCT
[ENA]
¡û
>W1911768581
QXGS01000003
Alphaproteobacteria
Roseomonas sp. CPCC 101021 [QXGS]
361757
361681
-
Arg
TCT
[ENA]
¡û
>PL201000235
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 plasmid: [CP015583]
1861476
1861552
+
Arg
TCT
[ENA]
¡û
>SRA1015332
SRR023846.21344
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
162
86
-
Arg
TCT
[SRA]
>W2011326138
QXGS01000003
Alphaproteobacteria
Roseomonas sp. CPCC 101021 [QXGS]
361757
361681
-
Arg
TCT
[ENA]
¡û
>W2011355706
RAQU01000049
Alphaproteobacteria
Roseomonas sp. Z24 [RAQU]
6673
6749
+
Arg
TCT
[ENA]
¡û
>W2011416828
RFLX01000023
Alphaproteobacteria
Roseomonas sp. Z23 [RFLX]
18734
18810
+
Arg
TCT
[ENA]
¡û
>W2011647022
SNVJ01000008
Alphaproteobacteria
Roseomonas sp. M0104 [SNVJ]
16823
16899
+
Arg
TCT
[ENA]
¡û
>W2011839009
UGVN01000001
Alphaproteobacteria
Roseomonas mucosa NCTC13291 [UGVN]
3583404
3583328
-
Arg
TCT
[ENA]
¡û
>W2011839074
UGVO01000001
Alphaproteobacteria
Roseomonas gilardii subsp. rosea NCTC13290 [UGVO]
1958109
1958033
-
Arg
TCT
[ENA]
¡û
>W2012004731
VEIX01000003
Alphaproteobacteria
Roseomonas gilardii DE0006 [VEIX]
293597
293521
-
Arg
TCT
[ENA]
¡û
>W2012152258
VUKA01000001
Alphaproteobacteria
Roseomonas oryzae KCTC 42542 [VUKA]
1294781
1294705
-
Arg
TCT
[ENA]
¡û
>W2110264425
JACTNF010000011
Alphaproteobacteria
Roseomonas sp. 1311 [JACTNF]
17611
17687
+
Arg
TCT
[ENA]
¡û
>W2110264464
JACTNG010000005
Alphaproteobacteria
Roseomonas sp. 573 [JACTNG]
18522
18598
+
Arg
TCT
[ENA]
¡û
>W2110265928
JACTUZ010000046
Alphaproteobacteria
Roseomonas ludipueritiae DSM 14915 [JACTUZ]
6672
6748
+
Arg
TCT
[ENA]
¡û
>W2110265987
JACTVA010000057
Alphaproteobacteria
Roseomonas aerophila NBRC 108923 [JACTVA]
24003
23927
-
Arg
TCT
[ENA]
¡û
>C211142370
CP061091
Alphaproteobacteria
Roseomonas sp. 1318 [CP061091]
2352867
2352943
+
Arg
TCT
-
¡û
>C211143866
CP061177
Alphaproteobacteria
Roseomonas sp. 546 [CP061177]
2594024
2593948
-
Arg
TCT
-
¡û
>C231032827
CP025061
Alphaproteobacteria
Roseomonas mucosa PG [CP025061]
2603247
2603323
+
Arg
TCT
-
¡û
>C231245145
CP087719
Alphaproteobacteria
Roseomonas sp. OT10 [CP087719]
1941299
1941223
-
Arg
TCT
-
¡û
>W2110762751
RCVQ01000001
Alphaproteobacteria
Roseomonas sp. KE0001 [RCVQ]
717903
717827
-
Arg
TCT
[ENA]
¡û
>C231412920
CP099471
Alphaproteobacteria
Roseomonas mucosa TT14 [CP099471]
4071011
4071087
+
Arg
TCT
-
¡û
>C241086935
CP044117
Alphaproteobacteria
Roseomonas mucosa FDAARGOS_658 [CP044114, CP044115, CP044116, CP044117]
1627599
1627523
-
Arg
TCT
-
¡û
>W121009557
AGEZ01000022
Alphaproteobacteria
Acetobacteraceae bacterium AT-5844 [AGEZ]
6679
6755
+
Arg
TCT
[ENA]
¡û
>W121113828
ALOX01000010
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
70096
70020
-
Arg
TCT
[ENA]
¡û
>W1610716123
LLWF01000026
Alphaproteobacteria
Roseomonas mucosa [LLWF]
21612
21536
-
Arg
TCT
[ENA]
¡û
>W1710084285
BDLP01000189
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
6931
7007
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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