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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177263 (127 seq.)
>W1711177206
LWFW01001812
Alphaproteobacteria
Sulfitobacter sp. HI0082 HI0082 [LWFW]
4638
4714
+
Arg
ACG
[ENA]
¡û
>W1711282588
LZNT01000060
Alphaproteobacteria
Ruegeria sp. PBVC088 [LZNT]
30527
30451
-
Arg
ACG
[ENA]
¡û
>W1711511039
MLCB01000090
Alphaproteobacteria
Planktotalea frisia [MLCB]
17496
17572
+
Arg
ACG
[ENA]
¡û
>W1711695332
MSIT01000016
Alphaproteobacteria
Salibaculum halophilum WDS1C4 [MSIT]
9689
9613
-
Arg
ACG
[ENA]
¡û
>W1712106687
NIVZ01000010
Alphaproteobacteria
Mameliella alba atlantica [NIVZ]
11700
11624
-
Arg
ACG
[ENA]
¡û
>W131183040
ARRM01000053
Alphaproteobacteria
Salipiger mucosus DSM 16094 [ARRM]
11771
11695
-
Arg
ACG
[ENA]
¡û
>W131231300
AUIJ01000004
Alphaproteobacteria
Sediminimonas qiaohouensis DSM 21189 [AUIJ]
38380
38304
-
Arg
ACG
[ENA]
¡û
>w011980
AALZ01000001
Alphaproteobacteria
Sulfitobacter sp. NAS-14.1 [AALZ]
253122
253044
-
Arg
ACG
[ENA]
¡û
>WENV180070863
MPLZ02195500
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
368
444
+
Arg
ACG
[ENA]
¡û
>WENV180214492
OBAP01004216
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
497
421
-
Arg
ACG
[ENA]
¡û
>WENV180362541
OBNX01003730
[OBNX] marine metagenome; ENVO:00002010
339
263
-
Arg
ACG
[ENA]
¡û
>WENV180380895
OBOR01046797
[OBOR] marine metagenome; ENVO 00002227
389
465
+
Arg
ACG
[ENA]
¡û
>WENV180389973
OBPK01008724
[OBPK] marine metagenome; Sterile flask
430
506
+
Arg
ACG
[ENA]
¡û
>WENV180392085
OBPO01005739
[OBPO] marine metagenome; seawater
1025
1101
+
Arg
ACG
[ENA]
¡û
>WENV180394543
OBPS01015081
[OBPS] marine metagenome; ENVO:00002010 seawater
249
173
-
Arg
ACG
[ENA]
¡û
>WENV180396768
OBPW01000957
[OBPW] marine metagenome; seawater
944
1020
+
Arg
ACG
[ENA]
¡û
>WENV180399343
OBQH01005508
[OBQH] marine metagenome; ENV:00002010
178
254
+
Arg
ACG
[ENA]
¡û
>WENV180594668
OCPA01000102
[OCPA] marine metagenome; ENVO:00002010
1876
1800
-
Arg
ACG
[ENA]
¡û
>WENV180595419
OCPD01021924
[OCPD] marine metagenome; Mesotrophic water
241
317
+
Arg
ACG
[ENA]
¡û
>W141064381
APVH01000003
Alphaproteobacteria
Salipiger mucosus DSM 16094 [APVH]
171193
171269
+
Arg
ACG
[ENA]
¡û
>W08005735
ABID01000001
Alphaproteobacteria
Sulfitobacter indolifex HEL-45 [ABID]
1454312
1454388
+
Arg
ACG
[ENA]
¡û
>WENV182541371
OJAT01003895
[OJAT] seawater metagenome; Sea water
320
244
-
Arg
ACG
[ENA]
¡û
>WENV182543601
OJBB01009156
[OJBB] seawater metagenome; Sea water
122
198
+
Arg
ACG
[ENA]
¡û
>WENV182544052
OJBE01000087
[OJBE] seawater metagenome; Sea water
22185
22261
+
Arg
ACG
[ENA]
¡û
>WENV182546247
OJBO01004024
[OJBO] seawater metagenome; Sea water
2956
3032
+
Arg
ACG
[ENA]
¡û
>WENV182549162
OJBX01030487
[OJBX] seawater metagenome; Sea water
78
154
+
Arg
ACG
[ENA]
¡û
>WENV182552812
OJCQ01000578
[OJCQ] seawater metagenome; Sea water
77
153
+
Arg
ACG
[ENA]
¡û
>WENV182555808
OJDD01001188
[OJDD] seawater metagenome; Sea water
2602
2678
+
Arg
ACG
[ENA]
¡û
>WENV182557762
OJDK01008028
[OJDK] seawater metagenome; Sea water
527
603
+
Arg
ACG
[ENA]
¡û
>WENV182562465
OJDZ01003757
[OJDZ] seawater metagenome; Sea water
2096
2020
-
Arg
ACG
[ENA]
¡û
>WENV182563911
OJED01002438
[OJED] seawater metagenome; Sea water
2559
2483
-
Arg
ACG
[ENA]
¡û
>WENV182567175
OJEN01008799
[OJEN] seawater metagenome; Sea water
593
517
-
Arg
ACG
[ENA]
¡û
>WENV182567558
OJEO01006965
[OJEO] seawater metagenome; Sea water
975
1051
+
Arg
ACG
[ENA]
¡û
>WENV182571285
OJFG01006699
[OJFG] seawater metagenome; Sea water
759
683
-
Arg
ACG
[ENA]
¡û
>WENV182583725
OJHE01000647
[OJHE] seawater metagenome; Sea water
2302
2226
-
Arg
ACG
[ENA]
¡û
>WENV182585748
OJHI01004824
[OJHI] seawater metagenome; Sea water
723
799
+
Arg
ACG
[ENA]
¡û
>WENV182588100
OJHO01003399
[OJHO] seawater metagenome; Sea water
2644
2720
+
Arg
ACG
[ENA]
¡û
>WENV182588121
OJHO01005143
[OJHO] seawater metagenome; Sea water
691
767
+
Arg
ACG
[ENA]
¡û
>W141284607
JALZ01000007
Alphaproteobacteria
Roseivivax halodurans JCM 10272 [JALZ]
43304
43228
-
Arg
ACG
[ENA]
¡û
>W141284745
JAMC01000005
Alphaproteobacteria
Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565 [JAMC]
75684
75760
+
Arg
ACG
[ENA]
¡û
>W141290232
JASF01000005
Alphaproteobacteria
Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565 [JASF]
1949806
1949882
+
Arg
ACG
[ENA]
¡û
>WENV183057212
OLHK01016603
[OLHK] seawater metagenome; Sea water
76
152
+
Arg
ACG
[ENA]
¡û
>WENV183626526
OOGI01024219
[OOGI] marine metagenome; seawater
294
218
-
Arg
ACG
[ENA]
¡û
>WENV183716663
PDWJ01000117
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
110472
110548
+
Arg
ACG
[ENA]
¡û
>WENV183719248
PDWJ01011161
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6144
6220
+
Arg
ACG
[ENA]
¡û
>WENV183720623
PDWJ01039836
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
22
98
+
Arg
ACG
[ENA]
¡û
>WENV183722452
PDWJ01130357
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
290
366
+
Arg
ACG
[ENA]
¡û
>WENV170015329
AZIG01002834
[AZIG] marine sediment metagenome; enrichment culture of sample MGS-AQ(UA) from oil contaminated terminal site at a crude oil
701
777
+
Arg
ACG
[ENA]
¡û
>WENV170118165
CENJ01048181
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
621
697
+
Arg
ACG
[ENA]
¡û
>WENV170155409
CEOG01027251
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1990
1914
-
Arg
ACG
[ENA]
¡û
>WENV170266441
CERE01070888
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
159
235
+
Arg
ACG
[ENA]
¡û
>WENV170271402
CERJ01011877
[CERJ] marine metagenome genome assembly TARA_066_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
214
290
+
Arg
ACG
[ENA]
¡û
>WENV170635378
JDSF01007628
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
431
355
-
Arg
ACG
[ENA]
¡û
>WENV170783012
MAAC01012848
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
16897
16821
-
Arg
ACG
[ENA]
¡û
>C191182587
CP040753
Alphaproteobacteria
Sulfitobacter sp. BSw21498 [CP040753]
41213
41289
+
Arg
ACG
-
¡û
>W141807904
JPOY01000011
Alphaproteobacteria
Sulfitobacter sp. CB2047 [JPOY]
2298921
2298845
-
Arg
ACG
[ENA]
¡û
>W1910442754
FWFM01000004
Alphaproteobacteria
Marinovum algicola CECT 5396 [FWFM]
18888
18964
+
Arg
ACG
[ENA]
¡û
>W1911539280
OMPR01000013
Alphaproteobacteria
Rhodobacteraceae bacterium EL53 [OMPR]
206405
206481
+
Arg
ACG
[ENA]
¡û
>W1810424143
PYUG01000007
Alphaproteobacteria
Sulfitobacter sp. CB-A [PYUG]
2298921
2298845
-
Arg
ACG
[ENA]
¡û
>W1810503952
QBKN01000009
Alphaproteobacteria
Allosediminivita pacifica DSM 29329 [QBKN]
48773
48849
+
Arg
ACG
[ENA]
¡û
>W1810633790
QITQ01000013
Alphaproteobacteria
Roseovarius amoyensis GCL-8 [QITQ]
61836
61912
+
Arg
ACG
[ENA]
¡û
>W1810787221
QRDO01000003
Alphaproteobacteria
Pontivivens insulae DSM 103361 [QRDO]
688059
688135
+
Arg
ACG
[ENA]
¡û
>W2010406064
FWFL01000001
Alphaproteobacteria
Pelagicola litorisediminis CECT 8287 [FWFL]
299120
299044
-
Arg
ACG
[ENA]
¡û
>W2010406118
FWFM01000004
Alphaproteobacteria
Marinovum algicola CECT 5396 [FWFM]
18888
18964
+
Arg
ACG
[ENA]
¡û
>W2010406472
FWFU01000001
Alphaproteobacteria
Roseovarius halotolerans CECT 8110 [FWFU]
1337107
1337183
+
Arg
ACG
[ENA]
¡û
>W2010409832
FWXB01000010
Alphaproteobacteria
Roseovarius aestuarii CECT 7745 [FWXB]
153452
153528
+
Arg
ACG
[ENA]
¡û
>W2010419562
FXYH01000003
Alphaproteobacteria
Pelagimonas varians CECT 8663 [FXYH]
345298
345222
-
Arg
ACG
[ENA]
¡û
>W2010727418
JACIFU010000001
Alphaproteobacteria
Sulfitobacter noctilucicola DSM 101015 [JACIFU]
1018845
1018921
+
Arg
ACG
[ENA]
¡û
>W2010732242
JACIJS010000012
Alphaproteobacteria
Rubricella aquisinus DSM 103377 [JACIJS]
33109
33033
-
Arg
ACG
[ENA]
¡û
>W2011169555
OMPR01000013
Alphaproteobacteria
Rhodobacteraceae bacterium EL53 [OMPR]
206405
206481
+
Arg
ACG
[ENA]
¡û
>W2011256987
QHLQ01000022
Alphaproteobacteria
Sedimentitalea sp. CY04 [QHLQ]
56506
56582
+
Arg
ACG
[ENA]
¡û
>W2011256988
QHLQ01000022
Alphaproteobacteria
Sedimentitalea sp. CY04 [QHLQ]
68202
68278
+
Arg
ACG
[ENA]
¡û
>W2011353737
RAPE01000005
Alphaproteobacteria
Roseovarius sp. HN-E21 [RAPE]
3776
3700
-
Arg
ACG
[ENA]
¡û
>W2011626589
SLZU01000010
Alphaproteobacteria
Primorskyibacter sedentarius DSM 104836 [SLZU]
124758
124682
-
Arg
ACG
[ENA]
¡û
>W2011641044
SMUV01000071
Alphaproteobacteria
Ruegeria sp. 318-1 [SMUV]
158728
158652
-
Arg
ACG
[ENA]
¡û
>W2011653692
SOAP01000003
Alphaproteobacteria
Tropicibacter phthalicicus DSM 26923 [SOAP]
72909
72985
+
Arg
ACG
[ENA]
¡û
>W2011750845
SZNL01000009
Alphaproteobacteria
Sulfitobacter sp. 15WGC [SZNL]
127528
127452
-
Arg
ACG
[ENA]
¡û
>W2011753971
SZWE01000001
Alphaproteobacteria
Roseovarius bejariae A21 [SZWE]
233291
233367
+
Arg
ACG
[ENA]
¡û
>W2011963139
VAUA01000007
Alphaproteobacteria
Pelagicola sp. DSW4-44 [VAUA]
258235
258311
+
Arg
ACG
[ENA]
¡û
>W2011963140
VAUA01000007
Alphaproteobacteria
Pelagicola sp. DSW4-44 [VAUA]
261501
261577
+
Arg
ACG
[ENA]
¡û
>W2012039968
VINQ01000025
Alphaproteobacteria
Aquicoccus porphyridii L1 8-17 [VINQ]
3383
3307
-
Arg
ACG
[ENA]
¡û
>W2012308949
WEIC01000004
Alphaproteobacteria
Amylibacter sp. SFDW26 [WEIC]
145766
145690
-
Arg
ACG
[ENA]
¡û
>W2110022090
BMEZ01000011
Alphaproteobacteria
Roseivivax pacificus CGMCC 1.12410 [BMEZ]
97420
97344
-
Arg
ACG
[ENA]
¡û
>W2110030625
BMLR01000001
Alphaproteobacteria
Roseovarius pacificus CGMCC 1.7083 [BMLR]
920787
920711
-
Arg
ACG
[ENA]
¡û
>W2110050185
BMZF01000001
Alphaproteobacteria
Amylibacter ulvae KCTC 32465 [BMZF]
668341
668265
-
Arg
ACG
[ENA]
¡û
>W2110240358
JACNMP010000048
Alphaproteobacteria
Pseudaestuariivita sp. H15 [JACNMP]
6671
6595
-
Arg
ACG
[ENA]
¡û
>W2110468586
JAFBRJ010000003
Alphaproteobacteria
Sulfitobacter geojensis TR60-93 [JAFBRJ]
456109
456033
-
Arg
ACG
[ENA]
¡û
>W2110468628
JAFBRK010000003
Alphaproteobacteria
Sulfitobacter geojensis TR60-89 [JAFBRK]
456109
456033
-
Arg
ACG
[ENA]
¡û
>W2110468754
JAFBRN010000003
Alphaproteobacteria
Sulfitobacter geojensis TR60-80 [JAFBRN]
456109
456033
-
Arg
ACG
[ENA]
¡û
>W2110468838
JAFBRP010000003
Alphaproteobacteria
Sulfitobacter geojensis TR60-77 [JAFBRP]
456109
456033
-
Arg
ACG
[ENA]
¡û
>W2110468922
JAFBRR010000003
Alphaproteobacteria
Sulfitobacter geojensis TR60-75 [JAFBRR]
456109
456033
-
Arg
ACG
[ENA]
¡û
>W2110468964
JAFBRS010000003
Alphaproteobacteria
Sulfitobacter geojensis TR60-74 [JAFBRS]
456109
456033
-
Arg
ACG
[ENA]
¡û
>W2110469090
JAFBRV010000003
Alphaproteobacteria
Sulfitobacter geojensis TR60-71 [JAFBRV]
456109
456033
-
Arg
ACG
[ENA]
¡û
>W2110469174
JAFBRX010000003
Alphaproteobacteria
Sulfitobacter geojensis TR60-117 [JAFBRX]
456109
456033
-
Arg
ACG
[ENA]
¡û
>W2110469300
JAFBSA010000003
Alphaproteobacteria
Sulfitobacter geojensis TR60-107 [JAFBSA]
456109
456033
-
Arg
ACG
[ENA]
¡û
>W2110469377
JAFBSC010000002
Alphaproteobacteria
Sulfitobacter geojensis MP20-8 [JAFBSC]
456109
456033
-
Arg
ACG
[ENA]
¡û
>W2110469453
JAFBSE010000002
Alphaproteobacteria
Sulfitobacter geojensis MP20-63 [JAFBSE]
456109
456033
-
Arg
ACG
[ENA]
¡û
>W2110603345
JAHHIQ010000026
Alphaproteobacteria
Ruegeria litorea 5C01 [JAHHIQ]
60188
60112
-
Arg
ACG
[ENA]
¡û
>W2110612489
JAHKQI010000006
Alphaproteobacteria
Lentibacter algarum B3M08 [JAHKQI]
117465
117389
-
Arg
ACG
[ENA]
¡û
>W2110653736
JAHVJF010000001
Alphaproteobacteria
Roseovarius atlanticus DP1N28-2 [JAHVJF]
1237524
1237448
-
Arg
ACG
[ENA]
¡û
>C211195932
CP064942
Alphaproteobacteria
Pontivivens sp. MT2928 [CP064942]
842615
842691
+
Arg
ACG
-
¡û
>C211206646
CP065429
Alphaproteobacteria
Sulfitobacter sp. B30-2 [CP065429]
2731384
2731308
-
Arg
ACG
-
¡û
>C231127672
CP072613
Alphaproteobacteria
Sulfitobacter sp. CB2047 [CP072613]
965275
965351
+
Arg
ACG
-
¡û
>C231169271
CP081098
Alphaproteobacteria
Rhodobacteraceae bacterium M382 [CP081098]
467646
467722
+
Arg
ACG
-
¡û
>C231169657
CP081126
Alphaproteobacteria
Sulfitobacter sp. W002 [CP081126]
2949660
2949584
-
Arg
ACG
-
¡û
>C231169705
CP081130
Alphaproteobacteria
Sulfitobacter sp. W074 [CP081130]
3037248
3037172
-
Arg
ACG
-
¡û
>C231181768
CP083564
Alphaproteobacteria
Sulfitobacter sp. W027 [CP083564]
564914
564990
+
Arg
ACG
-
¡û
>C231201462
CP084959
Alphaproteobacteria
Sulfitobacter pontiacus DSM 110277 [CP084959]
2815896
2815820
-
Arg
ACG
-
¡û
>C241011781
AP027373
Alphaproteobacteria
Sulfitobacter pontiacus BL28 [AP027373]
2717624
2717548
-
Arg
ACG
-
¡û
>C241035956
CP031598
Alphaproteobacteria
Roseovarius indicus DSM 26383 [CP031598]
2753137
2753061
-
Arg
ACG
-
¡û
>C241094724
CP045318
Alphaproteobacteria
Roseivivax sp. THAF197b [CP045318]
342856
342932
+
Arg
ACG
-
¡û
>C241095680
CP045372
Alphaproteobacteria
Sulfitobacter sp. THAF37 [CP045372]
547549
547473
-
Arg
ACG
-
¡û
>C241096110
CP045404
Alphaproteobacteria
Roseovarius sp. THAF9 [CP045404]
1723974
1723898
-
Arg
ACG
-
¡û
>C241111829
CP046620
Alphaproteobacteria
Algicella marina 9Alg 56 [CP046620]
2391485
2391409
-
Arg
ACG
-
¡û
>C241131144
CP048788
Alphaproteobacteria
Roseobacter ponti DSM 106830 [CP048788]
643149
643225
+
Arg
ACG
-
¡û
>C241135972
CP049344
Alphaproteobacteria
Sulfitobacter pontiacus S1704 [CP049344]
2824563
2824487
-
Arg
ACG
-
¡û
>C241329045
CP136692
Alphaproteobacteria
Sulfitobacter sp. LC.270.F.C4 [CP136692]
894426
894502
+
Arg
ACG
-
¡û
>C241329275
CP136697
Alphaproteobacteria
Sulfitobacter dubius CI.11.F.A3 [CP136697]
1717040
1716964
-
Arg
ACG
-
¡û
>C241359585
CP141179
Alphaproteobacteria
Roseovarius sp. Pro17 [CP141179]
3996416
3996492
+
Arg
ACG
-
¡û
>W2310023611
BSKR01000001
Alphaproteobacteria
Sulfitobacter pontiacus 191114_B17 [BSKR]
2736910
2736834
-
Arg
ACG
[ENA]
¡û
>W1610018460
AQQX01000010
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
15615
15539
-
Arg
ACG
[ENA]
¡û
>W1610630918
LIKT01000026
Alphaproteobacteria
Phaeobacter sp. 11ANDIMAR09 [LIKT]
11627
11551
-
Arg
ACG
[ENA]
¡û
>W1610984412
LWFD01000475
Alphaproteobacteria
Sulfitobacter sp. HI0054 [LWFD]
7435
7511
+
Arg
ACG
[ENA]
¡û
>W1610985519
LWFW01001812
Alphaproteobacteria
Sulfitobacter sp. HI0082 HI0082 [LWFW]
4638
4714
+
Arg
ACG
[ENA]
¡û
>W1710015676
AQQX01000010
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
15615
15539
-
Arg
ACG
[ENA]
¡û
>W1710559732
FOMW01000001
Alphaproteobacteria
Sulfitobacter brevis [FOMW]
407688
407612
-
Arg
ACG
[ENA]
¡û
>W1710591368
FRBR01000001
Alphaproteobacteria
Roseovarius pacificus [FRBR]
247608
247684
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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