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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177372 (27 seq.)
>W1710860176
LMCR01000012
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
464998
465074
+
Pro
TGG
[ENA]
¡û
>W1710861948
LMEA01000007
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
108103
108027
-
Pro
TGG
[ENA]
¡û
>W1711385174
MEDU01000133
Alphaproteobacteria
Devosia sp. SCN 66-27 [MEDU]
28273
28349
+
Pro
TGG
[ENA]
¡û
>W1711504872
MKUZ01000008
Alphaproteobacteria
Devosia sp. 66-22 [MKUZ]
106074
105998
-
Pro
TGG
[ENA]
¡û
>W1711504928
MKVA01000005
Alphaproteobacteria
Devosia sp. 67-54 [MKVA]
518498
518422
-
Pro
TGG
[ENA]
¡û
>W1711504989
MKVB01000010
Alphaproteobacteria
Devosia sp. 66-14 [MKVB]
3568
3492
-
Pro
TGG
[ENA]
¡û
>WENV180020231
FTCZ01000282
[FTCZ] metagenome; soil
3770
3694
-
Pro
TGG
[ENA]
¡û
>WENV180029236
FTJI01247529
[FTJI] metagenome; soil
53
129
+
Pro
TGG
[ENA]
¡û
>WENV180034772
FTKR01272955
[FTKR] metagenome; soil
53
129
+
Pro
TGG
[ENA]
¡û
>WENV180345211
OBLM01125463
[OBLM] soil metagenome; soil
239
163
-
Pro
TGG
[ENA]
¡û
>WENV181308510
OFIS01043159
[OFIS] sludge metagenome; sludge
314
390
+
Pro
TGG
[ENA]
¡û
>W141260980
CCAO010000084
Alphaproteobacteria
Devosia sp. DBB001 DDB001 [CCAO]
12599
12523
-
Pro
TGG
[ENA]
¡û
>WENV183728939
PJTQ01001247
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
7768
7692
-
Pro
TGG
[ENA]
¡û
>WENV183740533
PJUF01003173
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
229
305
+
Pro
TGG
[ENA]
¡û
>W141814316
JQGB01000024
Alphaproteobacteria
Devosia sp. 17-2-E-8 [JQGB]
41379
41455
+
Pro
TGG
[ENA]
¡û
>C151079164
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
1615017
1615093
+
Pro
TGG
[Ensembl]
¡û
>W2110022734
BMFM01000001
Alphaproteobacteria
Youhaiella tibetensis CGMCC 1.12719 [BMFM]
1012842
1012766
-
Pro
TGG
[ENA]
¡û
>W2110050143
BMZE01000001
Alphaproteobacteria
Devosia pacifica KCTC 32437 [BMZE]
55619
55543
-
Pro
TGG
[ENA]
¡û
>C201169819
CP045919
Alphaproteobacteria
Devosia sp. D6-9 [CP045919]
2213132
2213056
-
Pro
TGG
-
¡û
>C211255076
CP068983
Alphaproteobacteria
Paradevosia shaoguanensis J5-3 [CP068983]
4229428
4229504
+
Pro
TGG
-
¡û
>C241059294
CP041690
Alphaproteobacteria
Youhaiella tibetensis fig4 [CP041690]
2434249
2434325
+
Pro
TGG
-
¡û
>W2310024506
BSNS01000024
Alphaproteobacteria
Devosia nitrariae NBRC 112416 [BSNS]
353342
353266
-
Pro
TGG
[ENA]
¡û
>W1511541926
JZEX01000058
Alphaproteobacteria
Devosia geojensis BD-c194 [JZEX]
47480
47404
-
Pro
TGG
[ENA]
¡û
>C161047975
CP012945
Alphaproteobacteria
Devosia sp. A16 [CP012945]
4194954
4194878
-
Pro
TGG
-
¡û
>W1610722522
LMCR01000012
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
464998
465074
+
Pro
TGG
[ENA]
¡û
>W1610724294
LMEA01000007
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
108103
108027
-
Pro
TGG
[ENA]
¡û
>W1710582162
FPKU01000001
Alphaproteobacteria
Devosia enhydra [FPKU]
1106895
1106971
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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