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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177469 (18 seq.)
>WENV180013385
FMSI01076728
[FMSI] soil metagenome; Soil
1779
1705
-
Arg
TCT
[ENA]
¡û
>WENV181223042
OFDC01001372
[OFDC] hot springs metagenome; Water
8434
8360
-
Arg
TCT
[ENA]
¡û
>WENV181229013
OFEJ01000048
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
19221
19295
+
Arg
TCT
[ENA]
¡û
>WENV181285397
OFGS01000122
[OFGS] hot springs metagenome; Water and soil
17800
17874
+
Arg
TCT
[ENA]
¡û
>WENV181404503
OGCA01007847
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
428
502
+
Arg
TCT
[ENA]
¡û
>WENV181404519
OGCA01009081
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
631
705
+
Arg
TCT
[ENA]
¡û
>WENV181408274
OGCH01001319
[OGCH] hot springs metagenome; hot springs
1063
1137
+
Arg
TCT
[ENA]
¡û
>WENV181408891
OGCH01020509
[OGCH] hot springs metagenome; hot springs
171
245
+
Arg
TCT
[ENA]
¡û
>WENV170574097
FLYM01005425
[FLYM] hot springs metagenome; Sediment
1183
1257
+
Arg
TCT
[ENA]
¡û
>W141730216
JNIE01000004
Aquificota
Thermocrinis jamiesonii GBS [JNIE]
63746
63672
-
Arg
TCT
[ENA]
¡û
>C141011695
CP007028
Aquificota
Thermocrinis ruber DSM 23557 [CP007028]
1433780
1433706
-
Arg
TCT
-
¡û
>W1911493375
OBEN01000018
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
2651
2725
+
Arg
TCT
[ENA]
¡û
>W2011154326
OBEN01000018
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
2651
2725
+
Arg
TCT
[ENA]
¡û
>C211344100
CP076323
Aquificota
Hydrogenobacter thermophilus [CP076323]
1729478
1729552
+
Arg
TCT
-
¡û
>C211344146
CP076324
Aquificota
Aquificae bacterium [CP076324]
1330449
1330523
+
Arg
TCT
-
¡û
>C10107879
AP011112
Aquificota
Hydrogenobacter thermophilus TK-6 [AP011112]
884962
884888
-
Arg
TCT
-
¡û
>C10113036
CP001931
Aquificota
Thermocrinis albus DSM 14484 [CP001931]
1380428
1380354
-
Arg
TCT
[Ensembl]
¡û
>C11111352
CP002221
Aquificota
Hydrogenobacter thermophilus TK-6 [CP002221]
884954
884880
-
Arg
TCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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