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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177549 (45 seq.)
>WENV180042476
LQAF01000302
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
4417
4493
+
Arg
CCG
[ENA]
¡û
>WENV180210295
OBAL01195724
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
162
238
+
Arg
CCG
[ENA]
¡û
>WENV180368609
OBOF01151932
[OBOF] marine metagenome; ENVO:00002010
270
346
+
Arg
CCG
[ENA]
¡û
>W141055186
AONB01000013
Gammaproteobacteria
Nitrincola nitratireducens AK23 [AONB]
43119
43195
+
Arg
CCG
[ENA]
¡û
>WENV180636608
OCRF01024152
[OCRF] marine metagenome; niskin bottle
223
147
-
Arg
CCG
[ENA]
¡û
>WENV182590656
OJIJ01002559
[OJIJ] seawater metagenome; Sea water
808
884
+
Arg
CCG
[ENA]
¡û
>WENV170150852
CEOC01162703
[CEOC] marine metagenome genome assembly TARA_036_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
188
112
-
Arg
CCG
[ENA]
¡û
>WENV170167175
CEOO01183923
[CEOO] marine metagenome genome assembly TARA_036_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
513
589
+
Arg
CCG
[ENA]
¡û
>WENV170626125
FUWD013214069
[FUWD] metagenome; unknown
297
221
-
Arg
CCG
[ENA]
¡û
>WENV170655963
JTFN01103891
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
20
96
+
Arg
CCG
[ENA]
¡û
>WENV170656233
JTFO01005177
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
3267
3191
-
Arg
CCG
[ENA]
¡û
>WENV170657194
JTFO01099380
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
256
180
-
Arg
CCG
[ENA]
¡û
>WENV170658434
JTFP01112493
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
470
394
-
Arg
CCG
[ENA]
¡û
>WENV170782900
MAAC01011888
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1453
1377
-
Arg
CCG
[ENA]
¡û
>WENV170837467
MDSZ01149782
[MDSZ] marine metagenome; seawater
29878
29954
+
Arg
CCG
[ENA]
¡û
>W141557267
JHUZ01000014
Gammaproteobacteria
Balneatrix alpica DSM 16621 [JHUZ]
132678
132754
+
Arg
CCG
[ENA]
¡û
>W141712329
JMQN01000036
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
135015
134939
-
Arg
CCG
[ENA]
¡û
>SRA1000061
SRR000285.14552
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
25
101
+
Arg
CCG
[SRA]
>W2011482896
RQXV01000006
Gammaproteobacteria
Amphritea balenae JAMM 1525 [RQXV]
272025
272101
+
Arg
CCG
[ENA]
¡û
>W2011639512
SMRS01000006
Gammaproteobacteria
Nitrincola sp. MEB193 [SMRS]
211240
211164
-
Arg
CCG
[ENA]
¡û
>W2011963767
VAWC01000001
Gammaproteobacteria
Neptunomonas concharum JCM 17730 [VAWC]
340374
340450
+
Arg
CCG
[ENA]
¡û
>W2012209720
VYTY01000006
Gammaproteobacteria
Nitrincola alkalisediminis JCM 19317 [VYTY]
43359
43435
+
Arg
CCG
[ENA]
¡û
>W2012230786
WBOM01000001
Gammaproteobacteria
Nitrincola alkalilacustris NCAIM B.02612 [WBOM]
50530
50606
+
Arg
CCG
[ENA]
¡û
>W2012235814
WBYH01000006
Gammaproteobacteria
Marinobacterium sp. xm-a-127 [WBYH]
40869
40945
+
Arg
CCG
[ENA]
¡û
>W2012235820
WBYI01000002
Gammaproteobacteria
Marinobacterium sp. xm-a-152 [WBYI]
190461
190537
+
Arg
CCG
[ENA]
¡û
>W2012235883
WBYJ01000003
Gammaproteobacteria
Marinobacterium sp. xm-d-420 [WBYJ]
175008
175084
+
Arg
CCG
[ENA]
¡û
>W2012236019
WBYL01000006
Gammaproteobacteria
Marinobacterium sp. xm-d-510 [WBYL]
40869
40945
+
Arg
CCG
[ENA]
¡û
>W2012236032
WBYM01000003
Gammaproteobacteria
Marinobacterium sp. xm-d-530 [WBYM]
196349
196425
+
Arg
CCG
[ENA]
¡û
>W2012236096
WBYN01000002
Gammaproteobacteria
Marinobacterium sp. xm-d-543 [WBYN]
194029
193953
-
Arg
CCG
[ENA]
¡û
>W2012236293
WBYR01000003
Gammaproteobacteria
Marinobacterium sp. xm-g-59 [WBYR]
174976
175052
+
Arg
CCG
[ENA]
¡û
>W2012236361
WBYS01000003
Gammaproteobacteria
Marinobacterium sp. xm-m-312 [WBYS]
95594
95518
-
Arg
CCG
[ENA]
¡û
>W2012236398
WBYT01000002
Gammaproteobacteria
Marinobacterium sp. xm-m-383 [WBYT]
221218
221142
-
Arg
CCG
[ENA]
¡û
>W2012236496
WBYV01000002
Gammaproteobacteria
Marinobacterium sp. xm-v-242 [WBYV]
221218
221142
-
Arg
CCG
[ENA]
¡û
>W2110026505
BMIJ01000009
Gammaproteobacteria
Marinobacterium zhoushanense CGMCC 1.15341 [BMIJ]
67783
67859
+
Arg
CCG
[ENA]
¡û
>W2110030713
BMLT01000002
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
203483
203407
-
Arg
CCG
[ENA]
¡û
>W2110033945
BMOH01000002
Gammaproteobacteria
Amphritea balenae JCM 14781 [BMOH]
272725
272801
+
Arg
CCG
[ENA]
¡û
>W2110500828
JAFIDL010000014
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
24345
24269
-
Arg
CCG
[ENA]
¡û
>W2110640675
JAHREP010000007
Gammaproteobacteria
Marinobacterium ramblicola D7 [JAHREP]
59561
59637
+
Arg
CCG
[ENA]
¡û
>C201250619
CP051666
Gammaproteobacteria
Marinobacterium sp. LSUCC0821 [CP051666]
1750126
1750202
+
Arg
CCG
-
¡û
>C231011248
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
4809196
4809120
-
Arg
CCG
-
¡û
>C231011325
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
4816231
4816155
-
Arg
CCG
-
¡û
>C231011404
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
4601929
4601853
-
Arg
CCG
-
¡û
>C241083067
CP043869
Gammaproteobacteria
Neptunomonas concharum JCM17730 [CP043869]
253146
253222
+
Arg
CCG
-
¡û
>C241087504
CP044222
Gammaproteobacteria
Nitrincola iocasae KXZD1103 [CP044222]
3825048
3824972
-
Arg
CCG
-
¡û
>W1511349169
JRLB01000022
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
9018
8942
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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