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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177740 (115 seq.)
>C017250
AE004439
Gammaproteobacteria
Pasteurella multocida subsp. multocida str. Pm70 [AE004439]
1862907
1862983
+
Met
CAT
[Ensembl]
¡û
>C171000393
CP007040
Gammaproteobacteria
Pasteurella multocida subsp. multocida str. HN07 [CP007040]
2232621
2232545
-
Met
CAT
-
¡û
>WENV180005737
FLRW01295981
[FLRW] metagenome; saliva
89
13
-
Ile2
CAT
[ENA]
¡û
>WENV180006162
FLRX01219316
[FLRX] metagenome; saliva
142
66
-
Ile2
CAT
[ENA]
¡û
>WENV180010981
FLSI01053741
[FLSI] metagenome; saliva
115
191
+
Ile2
CAT
[ENA]
¡û
>WENV180697466
ODDE01000636
[ODDE] human metagenome; G_DNA_Supragingival plaque
6876
6952
+
Ile2
CAT
[ENA]
¡û
>WENV180720461
ODGJ01048393
[ODGJ] human metagenome; G_DNA_Tongue dorsum
122
198
+
Ile2
CAT
[ENA]
¡û
>WENV180726966
ODGU01001274
[ODGU] human metagenome; G_DNA_Supragingival plaque
5674
5750
+
Ile2
CAT
[ENA]
¡û
>WENV180750929
ODHS01012965
[ODHS] human metagenome; G_DNA_Supragingival plaque
466
390
-
Ile2
CAT
[ENA]
¡û
>WENV180759585
ODHY01039224
[ODHY] human metagenome; G_DNA_Buccal mucosa
7
83
+
Ile2
CAT
[ENA]
¡û
>WENV180796923
ODJB01019747
[ODJB] human metagenome; G_DNA_Supragingival plaque
760
836
+
Ile2
CAT
[ENA]
¡û
>WENV180822957
ODJW01001238
[ODJW] human metagenome; G_DNA_Supragingival plaque
285
361
+
Ile2
CAT
[ENA]
¡û
>WENV180824055
ODJX01000468
[ODJX] human metagenome; G_DNA_Supragingival plaque
5471
5547
+
Ile2
CAT
[ENA]
¡û
>WENV180831378
ODKB01130514
[ODKB] human metagenome; G_DNA_Tongue dorsum
212
286
+
Ile2
CAT
[ENA]
¡û
>WENV180831980
ODKC01000302
[ODKC] human metagenome; G_DNA_Supragingival plaque
23584
23660
+
Ile2
CAT
[ENA]
¡û
>WENV180856794
ODKZ01073590
[ODKZ] human metagenome; G_DNA_Tongue dorsum
186
110
-
Ile2
CAT
[ENA]
¡û
>WENV180859410
ODLD01000637
[ODLD] human metagenome; G_DNA_Supragingival plaque
5921
5845
-
Ile2
CAT
[ENA]
¡û
>WENV180925333
ODTK01091466
[ODTK] human metagenome; G_DNA_Supragingival plaque
315
390
+
Ile2
CAT
[ENA]
¡û
>WENV180943495
ODUC01000655
[ODUC] human metagenome; G_DNA_Supragingival plaque
6885
6961
+
Ile2
CAT
[ENA]
¡û
>WENV180952701
ODUI01001389
[ODUI] human metagenome; G_DNA_Tongue dorsum
226
302
+
Ile2
CAT
[ENA]
¡û
>WENV180988512
ODVL01002280
[ODVL] human metagenome; G_DNA_Tongue dorsum
5159
5083
-
Ile2
CAT
[ENA]
¡û
>WENV181002849
ODVX01002136
[ODVX] human metagenome; G_DNA_Supragingival plaque
5055
5131
+
Ile2
CAT
[ENA]
¡û
>WENV181008824
ODWE01015192
[ODWE] human metagenome; G_DNA_Supragingival plaque
838
762
-
Ile2
CAT
[ENA]
¡û
>WENV181009364
ODWE01057226
[ODWE] human metagenome; G_DNA_Supragingival plaque
326
250
-
Ile2
CAT
[ENA]
¡û
>WENV181019330
ODWU01002099
[ODWU] human metagenome; G_DNA_Supragingival plaque
3034
3110
+
Ile2
CAT
[ENA]
¡û
>WENV181045055
ODXV01133310
[ODXV] human metagenome; G_DNA_Tongue dorsum
141
65
-
Ile2
CAT
[ENA]
¡û
>WENV181063260
ODYP01000287
[ODYP] human metagenome; G_DNA_Supragingival plaque
29929
30005
+
Ile2
CAT
[ENA]
¡û
>WENV181080175
OEAS01030571
[OEAS] human metagenome; G_DNA_Supragingival plaque
399
323
-
Ile2
CAT
[ENA]
¡û
>WENV181152691
OEIA01004214
[OEIA] human metagenome; G_DNA_Supragingival plaque
2650
2574
-
Ile2
CAT
[ENA]
¡û
>WENV181158799
OEIH01009980
[OEIH] human metagenome; G_DNA_Supragingival plaque
1472
1396
-
Ile2
CAT
[ENA]
¡û
>WENV181181963
OEJV01001012
[OEJV] human metagenome; G_DNA_Supragingival plaque
3527
3451
-
Ile2
CAT
[ENA]
¡û
>WENV181182768
OEJV01043639
[OEJV] human metagenome; G_DNA_Supragingival plaque
207
283
+
Ile2
CAT
[ENA]
¡û
>WENV181446280
OGDT01000526
[OGDT] metagenome; Human gut stool
3716
3792
+
Ile2
CAT
[ENA]
¡û
>WENV181560983
OGJD01000036
[OGJD] metagenome; Human gut stool
36844
36768
-
Ile2
CAT
[ENA]
¡û
>WENV181567117
OGJJ01001499
[OGJJ] metagenome; Human gut stool
12671
12747
+
Ile2
CAT
[ENA]
¡û
>WENV181579689
OGJZ01000646
[OGJZ] metagenome; Human gut stool
39262
39338
+
Ile2
CAT
[ENA]
¡û
>WENV181582210
OGKB01000905
[OGKB] metagenome; Human gut stool
5100
5176
+
Ile2
CAT
[ENA]
¡û
>C181213680
LS483443
Gammaproteobacteria
Aggregatibacter segnis ATCC 33393 NCTC10977 [LS483443]
52957
53033
+
Met
CAT
-
¡û
>C191198673
LR134167
Gammaproteobacteria
Avibacterium volantium NCTC3438 [LR134167]
207889
207813
-
Met
CAT
-
¡û
>C09100031
CP001607
Gammaproteobacteria
Aggregatibacter aphrophilus NJ8700 [CP001607]
2263193
2263117
-
Met
CAT
[Ensembl]
¡û
>W1911198289
NRCJ01000004
Gammaproteobacteria
Aggregatibacter sp. PN_491 [NRCJ]
25130
25054
-
Met
CAT
[ENA]
¡û
>W1911198840
NRCU01000002
Gammaproteobacteria
Aggregatibacter segnis PN_651 [NRCU]
365800
365876
+
Met
CAT
[ENA]
¡û
>W1911198907
NRCV01000004
Gammaproteobacteria
Aggregatibacter segnis PN_450 [NRCV]
61783
61707
-
Met
CAT
[ENA]
¡û
>W1810109192
PHHA01000026
Gammaproteobacteria
Conservatibacter flavescens 7 7_4 [PHHA]
64878
64954
+
Met
CAT
[ENA]
¡û
>W1810265899
PQVI01000075
Gammaproteobacteria
Avibacterium endocarditidis 20186H4H1 [PQVI]
6080
6156
+
Met
CAT
[ENA]
¡û
>W1810265930
PQVJ01000015
Gammaproteobacteria
Avibacterium gallinarum NCTC 11188 [PQVJ]
96
172
+
Met
CAT
[ENA]
¡û
>W1810578054
QEPK01000001
Gammaproteobacteria
Aggregatibacter segnis C2000002669 [QEPK]
62533
62457
-
Met
CAT
[ENA]
¡û
>W1810578164
QEPM01000002
Gammaproteobacteria
Aggregatibacter segnis C2001002503 [QEPM]
352089
352165
+
Met
CAT
[ENA]
¡û
>C151006640
CP004391
Gammaproteobacteria
Pasteurella multocida subsp. multocida OH4807 [CP004391]
1527825
1527901
+
Met
CAT
[Ensembl]
¡û
>W2010770440
LEKL01000015
Gammaproteobacteria
Testudinibacter aquarius ELNT2X [LEKL]
13457
13533
+
Ile2
CAT
[ENA]
¡û
>W2011046581
NRCJ01000004
Gammaproteobacteria
Aggregatibacter sp. PN_491 [NRCJ]
25130
25054
-
Ile2
CAT
[ENA]
¡û
>W2011047132
NRCU01000002
Gammaproteobacteria
Aggregatibacter segnis PN_651 [NRCU]
365800
365876
+
Ile2
CAT
[ENA]
¡û
>W2011047199
NRCV01000004
Gammaproteobacteria
Aggregatibacter segnis PN_450 [NRCV]
61783
61707
-
Ile2
CAT
[ENA]
¡û
>W2011047227
NRCW01000001
Gammaproteobacteria
Aggregatibacter segnis HK_296 [NRCW]
73608
73532
-
Ile2
CAT
[ENA]
¡û
>W2011047291
NRCX01000003
Gammaproteobacteria
Aggregatibacter segnis CCUG 46700 [NRCX]
266038
266114
+
Ile2
CAT
[ENA]
¡û
>W2011624097
SLYB01000003
Gammaproteobacteria
Cricetibacter osteomyelitidis DSM 28404 [SLYB]
138585
138509
-
Ile2
CAT
[ENA]
¡û
>W2011631067
SMCP01000001
Gammaproteobacteria
Testudinibacter aquarius DSM 28140 [SMCP]
69787
69711
-
Ile2
CAT
[ENA]
¡û
>W2011649221
SNXJ01000003
Gammaproteobacteria
Avibacterium gallinarum DSM 17481 [SNXJ]
226361
226285
-
Ile2
CAT
[ENA]
¡û
>W2011761831
UATN01000048
Gammaproteobacteria
Pasteurella canis NCTC11650 [UATN]
1168903
1168979
+
Ile2
CAT
[ENA]
¡û
>W2011834763
UGSP01000001
Gammaproteobacteria
Avibacterium avium NCTC11297 [UGSP]
801942
802018
+
Ile2
CAT
[ENA]
¡û
>W2011834841
UGSQ01000003
Gammaproteobacteria
Avibacterium gallinarum NCTC11188 [UGSQ]
2123708
2123784
+
Ile2
CAT
[ENA]
¡û
>W2011834974
UGSS01000002
Gammaproteobacteria
[Pasteurella] mairii NCTC10699 [UGSS]
2025328
2025252
-
Ile2
CAT
[ENA]
¡û
>W2011836884
UGTV01000015
Gammaproteobacteria
Pasteurella canis NCTC11621 [UGTV]
2117041
2116965
-
Ile2
CAT
[ENA]
¡û
>W2011983046
VDGV01000003
Gammaproteobacteria
Testudinibacter aquarius ELNT2x [VDGV]
26564
26488
-
Ile2
CAT
[ENA]
¡û
>W2012445014
WUMP01000002
Gammaproteobacteria
Pasteurella canis QBSD [WUMP]
78793
78717
-
Ile2
CAT
[ENA]
¡û
>W2110073666
BPUX01000001
Gammaproteobacteria
Pasteurella canis PA42 [BPUX]
426219
426143
-
Ile2
CAT
[ENA]
¡û
>W2110204495
JACEWB010000002
Gammaproteobacteria
Avibacterium paragallinarum Z1S-2-1 [JACEWB]
63669
63593
-
Ile2
CAT
[ENA]
¡û
>W2110204602
JACEWD010000002
Gammaproteobacteria
Avibacterium paragallinarum Z2S-2-1 [JACEWD]
81038
81114
+
Ile2
CAT
[ENA]
¡û
>C211219026
CP065983
Gammaproteobacteria
Aggregatibacter segnis FDAARGOS_987 [CP065983]
1195441
1195365
-
Ile2
CAT
-
¡û
>C211307265
CP072381
Gammaproteobacteria
Aggregatibacter sp. oral taxon 513 W11186 [CP072381]
1513309
1513385
+
Ile2
CAT
-
¡û
>C231203524
CP085093
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans 23S [CP085093]
851198
851122
-
Ile2
CAT
-
¡û
>C231203583
CP085094
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans 5S [CP085094]
851240
851164
-
Ile2
CAT
-
¡û
>C231203638
CP085095
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans 5R [CP085095]
851240
851164
-
Ile2
CAT
-
¡û
>C231213326
CP085791
Gammaproteobacteria
Pasteurella canis HL_D1250 [CP085791]
2223334
2223258
-
Ile2
CAT
-
¡û
>C231216753
CP085871
Gammaproteobacteria
Pasteurella canis HL_NV12211 [CP085871]
2142816
2142740
-
Ile2
CAT
-
¡û
>C231216811
CP085873
Gammaproteobacteria
Pasteurella canis HL_D3081 [CP085873]
2197510
2197434
-
Ile2
CAT
-
¡û
>C231298813
CP091456
Gammaproteobacteria
Avibacterium sp. 20-132 [CP091456]
1099741
1099817
+
Ile2
CAT
-
¡û
>C231387732
CP097604
Gammaproteobacteria
Pasteurella multocida 10159 [CP097604]
2192270
2192194
-
Ile2
CAT
-
¡û
>C231387962
CP097608
Gammaproteobacteria
Pasteurella multocida 11205 [CP097608]
2252848
2252772
-
Ile2
CAT
-
¡û
>C231388076
CP097610
Gammaproteobacteria
Pasteurella multocida 32985 [CP097610]
2336076
2336000
-
Ile2
CAT
-
¡û
>C231388134
CP097612
Gammaproteobacteria
Pasteurella multocida 33011 [CP097612]
2351037
2350961
-
Ile2
CAT
-
¡û
>C231392373
CP097787
Gammaproteobacteria
Pasteurella multocida 38725 [CP097787]
1328762
1328686
-
Ile2
CAT
-
¡û
>C231392514
CP097790
Gammaproteobacteria
Pasteurella multocida 31971 [CP097790]
2167539
2167615
+
Ile2
CAT
-
¡û
>C231392571
CP097791
Gammaproteobacteria
Pasteurella multocida 41060 [CP097791]
1883229
1883305
+
Ile2
CAT
-
¡û
>C231393020
CP097799
Gammaproteobacteria
Pasteurella multocida 39639 [CP097799]
1953199
1953275
+
Ile2
CAT
-
¡û
>C231534620
CP110620
Gammaproteobacteria
Pasteurella multocida P5041881 [CP110620]
2234888
2234812
-
Ile2
CAT
-
¡û
>C231542257
CP111143
Gammaproteobacteria
Pasteurella multocida PF6 [CP111143]
2403587
2403511
-
Ile2
CAT
-
¡û
>C231542301
CP111144
Gammaproteobacteria
Pasteurella multocida PF7 [CP111144]
2369303
2369227
-
Ile2
CAT
-
¡û
>C231543163
CP112891
Gammaproteobacteria
Pasteurella multocida PF12 [CP112891]
2403622
2403546
-
Ile2
CAT
-
¡û
>C231543446
CP112896
Gammaproteobacteria
Pasteurella multocida PF18 [CP112896]
2403614
2403538
-
Ile2
CAT
-
¡û
>C231543560
CP112898
Gammaproteobacteria
Pasteurella multocida PF1 [CP112898]
2349640
2349564
-
Ile2
CAT
-
¡û
>C231547525
CP113236
Gammaproteobacteria
Pasteurella multocida PF8 [CP113236]
2369100
2369024
-
Ile2
CAT
-
¡û
>C231644891
CP121788
Gammaproteobacteria
Pasteurella multocida PM-3 [CP121788]
2246895
2246819
-
Ile2
CAT
-
¡û
>C231653426
OV100759
Gammaproteobacteria
Aggregatibacter sp. Marseille-P9115 [OV100759]
1532663
1532587
-
Ile2
CAT
-
¡û
>C241039934
CP033600
Gammaproteobacteria
Pasteurella multocida CQ6 [CP033600]
2254676
2254600
-
Ile2
CAT
-
¡û
>C241175400
CP058992
Gammaproteobacteria
Pasteurella multocida X0120 [CP058992]
2179223
2179147
-
Ile2
CAT
-
¡û
>C241175465
CP058993
Gammaproteobacteria
Pasteurella multocida 618/90 [CP058993]
2179222
2179146
-
Ile2
CAT
-
¡û
>C241175520
CP058994
Gammaproteobacteria
Pasteurella multocida 619/90 [CP058994]
2179222
2179146
-
Ile2
CAT
-
¡û
>C241179131
CP059703
Gammaproteobacteria
Pasteurella multocida RCAD0726 [CP059703]
2384145
2384069
-
Ile2
CAT
-
¡û
>C241261552
CP125806
Gammaproteobacteria
Pasteurella multocida P030653/2 [CP125806]
2320581
2320505
-
Ile2
CAT
-
¡û
>C241263640
CP126055
Gammaproteobacteria
Pasteurella multocida P030653/1 [CP126055]
2320587
2320511
-
Ile2
CAT
-
¡û
>C241311209
CP133639
Gammaproteobacteria
Pasteurella multocida Past6 [CP133639]
2121571
2121495
-
Ile2
CAT
-
¡û
>C241323366
CP135194
Gammaproteobacteria
Pasteurella multocida 102426 [CP135194]
92292
92368
+
Ile2
CAT
-
¡û
>C241375937
CP143878
Gammaproteobacteria
Pasteurella multocida subsp. multocida LH06 [CP143878]
1468029
1467953
-
Ile2
CAT
-
¡û
>C10100106
CP001733
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D11S-1 [CP001733]
675559
675483
-
Met
CAT
[Ensembl]
¡û
>W2310014512
BQFX01000012
Gammaproteobacteria
Pasteurella canis PA57 [BQFX]
290167
290091
-
Ile2
CAT
[ENA]
¡û
>C11109493
CP002667
Gammaproteobacteria
Gallibacterium anatis UMN179 [CP002667]
183185
183261
+
Met
CAT
[Ensembl]
¡û
>W1511438913
JUNA01000010
Gammaproteobacteria
Aggregatibacter segnis 933_AAPH [JUNA]
58189
58113
-
Met
CAT
[ENA]
¡û
>W1511461100
JVME01000011
Gammaproteobacteria
Pasteurella multocida 306_PMUL [JVME]
100550
100626
+
Met
CAT
[ENA]
¡û
>W11143266
AEPS01000010
Gammaproteobacteria
Aggregatibacter segnis ATCC 33393 [AEPS]
103239
103315
+
Met
CAT
[ENA]
¡û
>C121004094
CP003022
Gammaproteobacteria
Pasteurella multocida 36950 [CP003022]
2250043
2249967
-
Met
CAT
[Ensembl]
¡û
>C121013606
CP003496
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans D7S-1 [CP003496]
1708876
1708800
-
Met
CAT
[Ensembl]
¡û
>C161004558
CP006976
Gammaproteobacteria
Pasteurella multocida subsp. multocida HB01 [CP006976]
2244981
2244905
-
Met
CAT
-
¡û
>C161048281
CP012958
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans VT1169 [CP012958]
144516
144440
-
Met
CAT
-
¡û
>C161098831
CP016553
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans IDH781 [CP016553]
123808
123884
+
Met
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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