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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177790 (140 seq.)
>WENV180004397
FLRS01001425
[FLRS] metagenome; saliva
160
236
+
Arg
GCG
[ENA]
¡û
>WENV180005197
FLRW01000173
[FLRW] metagenome; saliva
889
813
-
Arg
GCG
[ENA]
¡û
>WENV180006175
FLRX01229743
[FLRX] metagenome; saliva
76
1
-
Arg
GCG
[ENA]
¡û
>WENV180006898
FLRZ01015061
[FLRZ] metagenome; saliva
242
166
-
Arg
GCG
[ENA]
¡û
>WENV180008164
FLSB01004337
[FLSB] metagenome; saliva
419
343
-
Arg
GCG
[ENA]
¡û
>WENV180009871
FLSC01135774
[FLSC] metagenome; saliva
5
81
+
Arg
GCG
[ENA]
¡û
>WENV180010214
FLSC01416501
[FLSC] metagenome; saliva
254
330
+
Arg
GCG
[ENA]
¡û
>WENV180011919
FLSK01094304
[FLSK] metagenome; saliva
575
651
+
Arg
GCG
[ENA]
¡û
>WENV180012208
FLSK01258860
[FLSK] metagenome; saliva
3058
3134
+
Arg
GCG
[ENA]
¡û
>WENV180171568
OAVW01004689
[OAVW] human gut metagenome; faeces
1052
1128
+
Arg
GCG
[ENA]
¡û
>WENV180225790
OBBP01000025
[OBBP] human oral metagenome; human oral
21015
20939
-
Arg
GCG
[ENA]
¡û
>WENV180550013
OCIZ01004642
[OCIZ] human oral metagenome; human oral
960
1036
+
Arg
GCG
[ENA]
¡û
>WENV180704820
ODEJ01000081
[ODEJ] human metagenome; G_DNA_Tongue dorsum
44821
44745
-
Arg
GCG
[ENA]
¡û
>WENV180704854
ODEJ01000151
[ODEJ] human metagenome; G_DNA_Tongue dorsum
15074
15150
+
Arg
GCG
[ENA]
¡û
>WENV180707678
ODFJ01000002
[ODFJ] human metagenome; G_DNA_Tongue dorsum
89309
89233
-
Arg
GCG
[ENA]
¡û
>WENV180719746
ODGJ01005047
[ODGJ] human metagenome; G_DNA_Tongue dorsum
625
549
-
Arg
GCG
[ENA]
¡û
>WENV180721138
ODGK01010621
[ODGK] human metagenome; G_DNA_Palatine Tonsils
159
83
-
Arg
GCG
[ENA]
¡û
>WENV180724141
ODGR01000116
[ODGR] human metagenome; G_DNA_Tongue dorsum
48739
48815
+
Arg
GCG
[ENA]
¡û
>WENV180757349
ODHW01000244
[ODHW] human metagenome; G_DNA_Tongue dorsum
46084
46008
-
Arg
GCG
[ENA]
¡û
>WENV180757771
ODHW01001877
[ODHW] human metagenome; G_DNA_Tongue dorsum
809
885
+
Arg
GCG
[ENA]
¡û
>WENV180763170
ODIA01000190
[ODIA] human metagenome; G_DNA_Tongue dorsum
505
429
-
Arg
GCG
[ENA]
¡û
>WENV180768859
ODIG01020525
[ODIG] human metagenome; G_DNA_Tongue dorsum
640
564
-
Arg
GCG
[ENA]
¡û
>WENV180773404
ODIJ01000191
[ODIJ] human metagenome; G_DNA_Tongue dorsum
1055
1131
+
Arg
GCG
[ENA]
¡û
>WENV180775726
ODIK01003360
[ODIK] human metagenome; G_DNA_Tongue dorsum
1168
1244
+
Arg
GCG
[ENA]
¡û
>WENV180779271
ODIN01001631
[ODIN] human metagenome; G_DNA_Throat
1153
1229
+
Arg
GCG
[ENA]
¡û
>WENV180782704
ODIQ01000121
[ODIQ] human metagenome; G_DNA_Tongue dorsum
56697
56773
+
Arg
GCG
[ENA]
¡û
>WENV180786791
ODIS01000234
[ODIS] human metagenome; G_DNA_Supragingival plaque
29067
28991
-
Arg
GCG
[ENA]
¡û
>WENV180790697
ODIT01031209
[ODIT] human metagenome; G_DNA_Tongue dorsum
625
549
-
Arg
GCG
[ENA]
¡û
>WENV180792584
ODIW01000897
[ODIW] human metagenome; G_DNA_Tongue dorsum
4870
4794
-
Arg
GCG
[ENA]
¡û
>WENV180794837
ODIZ01007063
[ODIZ] human metagenome; G_DNA_Tongue dorsum
2235
2159
-
Arg
GCG
[ENA]
¡û
>WENV180802333
ODJE01001217
[ODJE] human metagenome; G_DNA_Tongue dorsum
11295
11219
-
Arg
GCG
[ENA]
¡û
>WENV180805443
ODJH01000012
[ODJH] human metagenome; G_DNA_Tongue dorsum
17283
17359
+
Arg
GCG
[ENA]
¡û
>WENV180807623
ODJI01004945
[ODJI] human metagenome; G_DNA_Tongue dorsum
3262
3186
-
Arg
GCG
[ENA]
¡û
>WENV180809554
ODJK01024250
[ODJK] human metagenome; G_DNA_Subgingival plaque
144
68
-
Arg
GCG
[ENA]
¡û
>WENV180816147
ODJP01005082
[ODJP] human metagenome; G_DNA_Tongue dorsum
2451
2527
+
Arg
GCG
[ENA]
¡û
>WENV180820222
ODJR01003038
[ODJR] human metagenome; G_DNA_Tongue dorsum
815
891
+
Arg
GCG
[ENA]
¡û
>WENV180821275
ODJS01003282
[ODJS] human metagenome; G_DNA_Tongue dorsum
1846
1922
+
Arg
GCG
[ENA]
¡û
>WENV180830813
ODKB01014155
[ODKB] human metagenome; G_DNA_Tongue dorsum
1559
1483
-
Arg
GCG
[ENA]
¡û
>WENV180833442
ODKC01050467
[ODKC] human metagenome; G_DNA_Supragingival plaque
28
104
+
Arg
GCG
[ENA]
¡û
>WENV180845595
ODKT01001062
[ODKT] human metagenome; G_DNA_Supragingival plaque
4194
4270
+
Arg
GCG
[ENA]
¡û
>WENV180852480
ODKW01001389
[ODKW] human metagenome; G_DNA_Tongue dorsum
8934
8858
-
Arg
GCG
[ENA]
¡û
>WENV180853671
ODKX01000014
[ODKX] human metagenome; G_DNA_Tongue dorsum
44828
44904
+
Arg
GCG
[ENA]
¡û
>WENV180856489
ODKZ01020704
[ODKZ] human metagenome; G_DNA_Tongue dorsum
403
479
+
Arg
GCG
[ENA]
¡û
>WENV180857899
ODLC01000167
[ODLC] human metagenome; G_DNA_Tongue dorsum
17284
17360
+
Arg
GCG
[ENA]
¡û
>WENV180860608
ODLE01000001
[ODLE] human metagenome; G_DNA_Tongue dorsum
314892
314968
+
Arg
GCG
[ENA]
¡û
>WENV180864216
ODLH01016744
[ODLH] human metagenome; G_DNA_Tongue dorsum
507
431
-
Arg
GCG
[ENA]
¡û
>WENV180865203
ODLI01050304
[ODLI] human metagenome; G_DNA_Buccal mucosa
239
163
-
Arg
GCG
[ENA]
¡û
>WENV180865408
ODLJ01000030
[ODLJ] human metagenome; G_DNA_Tongue dorsum
74503
74579
+
Arg
GCG
[ENA]
¡û
>WENV180873634
ODLP01013760
[ODLP] human metagenome; G_DNA_Tongue dorsum
1167
1243
+
Arg
GCG
[ENA]
¡û
>WENV180874744
ODLQ01005192
[ODLQ] human metagenome; G_DNA_Tongue dorsum
1771
1695
-
Arg
GCG
[ENA]
¡û
>WENV180874773
ODLQ01005635
[ODLQ] human metagenome; G_DNA_Tongue dorsum
1591
1515
-
Arg
GCG
[ENA]
¡û
>WENV180878113
ODLV01014525
[ODLV] human metagenome; G_DNA_Tongue dorsum
405
329
-
Arg
GCG
[ENA]
¡û
>WENV180880988
ODLZ01110562
[ODLZ] human metagenome; G_DNA_Tongue dorsum
259
183
-
Arg
GCG
[ENA]
¡û
>WENV180883367
ODMC01004260
[ODMC] human metagenome; G_DNA_Tongue dorsum
5920
5996
+
Arg
GCG
[ENA]
¡û
>WENV180888263
ODMN01000343
[ODMN] human metagenome; G_DNA_Supragingival plaque
1195
1271
+
Arg
GCG
[ENA]
¡û
>WENV180890656
ODMO01007711
[ODMO] human metagenome; G_DNA_Tongue dorsum
680
756
+
Arg
GCG
[ENA]
¡û
>WENV180896291
ODNI01000281
[ODNI] human metagenome; G_DNA_Tongue dorsum
34164
34240
+
Arg
GCG
[ENA]
¡û
>WENV180899773
ODOJ01000031
[ODOJ] human metagenome; G_DNA_Tongue dorsum
110589
110665
+
Arg
GCG
[ENA]
¡û
>WENV180901910
ODOK01007614
[ODOK] human metagenome; G_DNA_Tongue dorsum
405
329
-
Arg
GCG
[ENA]
¡û
>WENV180917435
ODTD01024875
[ODTD] human metagenome; G_DNA_Tongue dorsum
645
721
+
Arg
GCG
[ENA]
¡û
>WENV180919614
ODTH01000007
[ODTH] human metagenome; G_DNA_Tongue dorsum
26742
26818
+
Arg
GCG
[ENA]
¡û
>WENV180928814
ODTN01000022
[ODTN] human metagenome; G_DNA_Tongue dorsum
101417
101493
+
Arg
GCG
[ENA]
¡û
>WENV180932136
ODTP01026505
[ODTP] human metagenome; G_DNA_Tongue dorsum
683
759
+
Arg
GCG
[ENA]
¡û
>WENV180943805
ODUC01002760
[ODUC] human metagenome; G_DNA_Supragingival plaque
4739
4663
-
Arg
GCG
[ENA]
¡û
>WENV180946221
ODUD01018811
[ODUD] human metagenome; G_DNA_Tongue dorsum
231
307
+
Arg
GCG
[ENA]
¡û
>WENV180949398
ODUG01015937
[ODUG] human metagenome; G_DNA_Tongue dorsum
920
996
+
Arg
GCG
[ENA]
¡û
>WENV180951398
ODUH01020898
[ODUH] human metagenome; G_DNA_Subgingival plaque
404
328
-
Arg
GCG
[ENA]
¡û
>WENV180952602
ODUI01000605
[ODUI] human metagenome; G_DNA_Tongue dorsum
4606
4530
-
Arg
GCG
[ENA]
¡û
>WENV180954765
ODUJ01008904
[ODUJ] human metagenome; G_DNA_Tongue dorsum
2123
2047
-
Arg
GCG
[ENA]
¡û
>WENV180960156
ODUM01012235
[ODUM] human metagenome; G_DNA_Tongue dorsum
592
516
-
Arg
GCG
[ENA]
¡û
>WENV180968807
ODUT01082512
[ODUT] human metagenome; G_DNA_Tongue dorsum
259
183
-
Arg
GCG
[ENA]
¡û
>WENV180975603
ODUY01012045
[ODUY] human metagenome; G_DNA_Supragingival plaque
1322
1246
-
Arg
GCG
[ENA]
¡û
>WENV180977310
ODUZ01000298
[ODUZ] human metagenome; G_DNA_Tongue dorsum
20887
20963
+
Arg
GCG
[ENA]
¡û
>WENV180980418
ODVE01000134
[ODVE] human metagenome; G_DNA_Supragingival plaque
954
1030
+
Arg
GCG
[ENA]
¡û
>WENV180985313
ODVJ01002411
[ODVJ] human metagenome; G_DNA_Tongue dorsum
3168
3244
+
Arg
GCG
[ENA]
¡û
>WENV180988683
ODVL01006547
[ODVL] human metagenome; G_DNA_Tongue dorsum
1343
1419
+
Arg
GCG
[ENA]
¡û
>WENV180990181
ODVN01000576
[ODVN] human metagenome; G_DNA_Tongue dorsum
22955
23031
+
Arg
GCG
[ENA]
¡û
>WENV180998343
ODVT01000215
[ODVT] human metagenome; G_DNA_Buccal mucosa
21205
21281
+
Arg
GCG
[ENA]
¡û
>WENV181011641
ODWI01068650
[ODWI] human metagenome; G_DNA_Tongue dorsum
13
89
+
Arg
GCG
[ENA]
¡û
>WENV181016490
ODWR01001391
[ODWR] human metagenome; G_DNA_Tongue dorsum
3981
3905
-
Arg
GCG
[ENA]
¡û
>WENV181020107
ODWU01055432
[ODWU] human metagenome; G_DNA_Supragingival plaque
73
-1
-
Arg
GCG
[ENA]
¡û
>WENV181021542
ODWV01017178
[ODWV] human metagenome; G_DNA_Tongue dorsum
783
859
+
Arg
GCG
[ENA]
¡û
>WENV181033618
ODXN01014575
[ODXN] human metagenome; G_DNA_Tongue dorsum
1526
1450
-
Arg
GCG
[ENA]
¡û
>WENV181039765
ODXQ01048492
[ODXQ] human metagenome; G_DNA_Tongue dorsum
77
1
-
Arg
GCG
[ENA]
¡û
>WENV181040859
ODXS01001698
[ODXS] human metagenome; G_DNA_Tongue dorsum
10170
10246
+
Arg
GCG
[ENA]
¡û
>WENV181041334
ODXS01009728
[ODXS] human metagenome; G_DNA_Tongue dorsum
1733
1809
+
Arg
GCG
[ENA]
¡û
>WENV181043359
ODXU01146633
[ODXU] human metagenome; G_DNA_Buccal mucosa
206
130
-
Arg
GCG
[ENA]
¡û
>WENV181044781
ODXV01038502
[ODXV] human metagenome; G_DNA_Tongue dorsum
346
422
+
Arg
GCG
[ENA]
¡û
>WENV181045189
ODXW01000019
[ODXW] human metagenome; G_DNA_Tongue dorsum
56641
56565
-
Arg
GCG
[ENA]
¡û
>WENV181052183
ODYE01040165
[ODYE] human metagenome; G_DNA_Tongue dorsum
109
33
-
Arg
GCG
[ENA]
¡û
>WENV181052639
ODYG01008106
[ODYG] human metagenome; G_DNA_Tongue dorsum
351
275
-
Arg
GCG
[ENA]
¡û
>WENV181058377
ODYL01009362
[ODYL] human metagenome; G_DNA_Tongue dorsum
77
1
-
Arg
GCG
[ENA]
¡û
>WENV181060118
ODYM01043874
[ODYM] human metagenome; G_DNA_Tongue dorsum
407
483
+
Arg
GCG
[ENA]
¡û
>WENV181063284
ODYP01000335
[ODYP] human metagenome; G_DNA_Supragingival plaque
27218
27142
-
Arg
GCG
[ENA]
¡û
>WENV181068797
ODZZ01002635
[ODZZ] human metagenome; G_DNA_Tongue dorsum
5549
5625
+
Arg
GCG
[ENA]
¡û
>WENV181073571
OEAO01000535
[OEAO] human metagenome; G_DNA_Tongue dorsum
29446
29522
+
Arg
GCG
[ENA]
¡û
>WENV181073660
OEAO01000715
[OEAO] human metagenome; G_DNA_Tongue dorsum
1330
1254
-
Arg
GCG
[ENA]
¡û
>WENV181078628
OEAS01000195
[OEAS] human metagenome; G_DNA_Supragingival plaque
27601
27525
-
Arg
GCG
[ENA]
¡û
>WENV181085723
OEAX01044987
[OEAX] human metagenome; G_DNA_Tongue dorsum
101
25
-
Arg
GCG
[ENA]
¡û
>WENV181086443
OEAY01000690
[OEAY] human metagenome; G_DNA_Tongue dorsum
4762
4686
-
Arg
GCG
[ENA]
¡û
>WENV181092087
OEBC01228402
[OEBC] human metagenome; G_DNA_Supragingival plaque
266
190
-
Arg
GCG
[ENA]
¡û
>WENV181094367
OEBY01000108
[OEBY] human metagenome; G_DNA_Tongue dorsum
34893
34817
-
Arg
GCG
[ENA]
¡û
>WENV181097643
OECA01018315
[OECA] human metagenome; G_DNA_Tongue dorsum
578
654
+
Arg
GCG
[ENA]
¡û
>WENV181101518
OECT01000058
[OECT] human metagenome; G_DNA_Tongue dorsum
76620
76544
-
Arg
GCG
[ENA]
¡û
>WENV181101825
OECT01000294
[OECT] human metagenome; G_DNA_Tongue dorsum
34838
34762
-
Arg
GCG
[ENA]
¡û
>WENV181103773
OECV01003133
[OECV] human metagenome; G_DNA_Throat
98
22
-
Arg
GCG
[ENA]
¡û
>WENV181104605
OEED01000008
[OEED] human metagenome; G_DNA_Tongue dorsum
103284
103208
-
Arg
GCG
[ENA]
¡û
>WENV181108580
OEEJ01000081
[OEEJ] human metagenome; G_DNA_Tongue dorsum
37445
37521
+
Arg
GCG
[ENA]
¡û
>WENV181111996
OEEL01000069
[OEEL] human metagenome; G_DNA_Tongue dorsum
76620
76544
-
Arg
GCG
[ENA]
¡û
>WENV181112218
OEEL01000252
[OEEL] human metagenome; G_DNA_Tongue dorsum
6986
7062
+
Arg
GCG
[ENA]
¡û
>WENV181114001
OEEO01000030
[OEEO] human metagenome; G_DNA_Supragingival plaque
33901
33825
-
Arg
GCG
[ENA]
¡û
>WENV181130272
OEFY01004110
[OEFY] human metagenome; G_DNA_Throat
144
68
-
Arg
GCG
[ENA]
¡û
>WENV181135516
OEGG01027751
[OEGG] human metagenome; G_DNA_Tongue dorsum
95
19
-
Arg
GCG
[ENA]
¡û
>WENV181139955
OEGN01039804
[OEGN] human metagenome; G_DNA_Tongue dorsum
77
1
-
Arg
GCG
[ENA]
¡û
>WENV181140815
OEGT01000171
[OEGT] human metagenome; G_DNA_Throat
8904
8828
-
Arg
GCG
[ENA]
¡û
>WENV181150078
OEHW01000402
[OEHW] human metagenome; G_DNA_Tongue dorsum
4335
4411
+
Arg
GCG
[ENA]
¡û
>WENV181157364
OEIG01002746
[OEIG] human metagenome; G_DNA_Hard palate
2322
2246
-
Arg
GCG
[ENA]
¡û
>WENV181160850
OEIK01046729
[OEIK] human metagenome; G_DNA_Supragingival plaque
351
427
+
Arg
GCG
[ENA]
¡û
>WENV181176424
OEJR01003741
[OEJR] human metagenome; G_DNA_Saliva
1055
1131
+
Arg
GCG
[ENA]
¡û
>WENV181920172
OGYI01031357
[OGYI] human gut metagenome; faeces
305
229
-
Arg
GCG
[ENA]
¡û
>WENV181953093
OGZI01002529
[OGZI] human gut metagenome; faeces
6168
6092
-
Arg
GCG
[ENA]
¡û
>WENV182519583
OIWP01025540
[OIWP] human gut metagenome; faeces
93
17
-
Arg
GCG
[ENA]
¡û
>WENV182891773
OKSH01004031
[OKSH] human gut metagenome; faeces
1001
925
-
Arg
GCG
[ENA]
¡û
>WENV183149821
OLOO01026531
[OLOO] human gut metagenome; faeces
133
57
-
Arg
GCG
[ENA]
¡û
>WENV183242133
OLRB01005095
[OLRB] human gut metagenome; faeces
2308
2232
-
Arg
GCG
[ENA]
¡û
>C191173945
CP040011
Unclassified
TM7 phylum sp. oral taxon 952 TM7x [CP040011]
23011
22935
-
Arg
GCG
-
¡û
>C151025515
CP007496
Unclassified
Candidatus Nanosynbacter lyticus TM7x [CP007496]
23012
22936
-
Arg
GCG
[Ensembl]
¡û
>W2010362312
CADDWL010000004
Unclassified
Candidatus Saccharibacteria bacterium [CADDWL]
726
650
-
Arg
GCG
[ENA]
¡û
>W2011551595
SDRM01000008
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG8 [SDRM]
9114
9038
-
Arg
GCG
[ENA]
¡û
>W2011551611
SDRN01000002
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG7 [SDRN]
28637
28561
-
Arg
GCG
[ENA]
¡û
>W2011551656
SDRO01000052
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG6 [SDRO]
2429
2353
-
Arg
GCG
[ENA]
¡û
>W2011551694
SDRQ01000003
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG3 [SDRQ]
31529
31453
-
Arg
GCG
[ENA]
¡û
>W2011551736
SDRR01000004
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG2 [SDRR]
22159
22235
+
Arg
GCG
[ENA]
¡û
>W2011551810
SDRS01000075
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG1 [SDRS]
351
275
-
Arg
GCG
[ENA]
¡û
>W2011552072
SDSB01000006
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG5 [SDSB]
23538
23614
+
Arg
GCG
[ENA]
¡û
>W2110104620
CAJGBL010000186
Unclassified
Candidatus Saccharibacteria bacterium [CAJGBL]
2329
2405
+
Arg
GCG
[ENA]
¡û
>C211345795
CP076459
Unclassified
Candidatus Saccharibacteria bacterium IHU2 [CP076459]
23135
23059
-
Arg
GCG
-
¡û
>C211345827
CP076460
Unclassified
Candidatus Saccharibacteria bacterium IHU1 [CP076460]
23169
23093
-
Arg
GCG
-
¡û
>C231262954
CP089520
Unclassified
Candidatus Nanosynbacter sp. HMT-352 KC1 [CP089520]
649828
649752
-
Arg
GCG
-
¡û
>C231663691
OX335598
Unclassified
Candidatus Saccharibacteria bacterium [OX335598]
677399
677323
-
Arg
GCG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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