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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177808 (51 seq.)
>W1711775017
MVJM01000001
Bacillota
Halalkalibacter urbisdiaboli 45385 [MVJM]
571975
571900
-
Met
CAT
[ENA]
¡û
>W1711775047
MVJM01000003
Bacillota
Halalkalibacter urbisdiaboli 45385 [MVJM]
1038407
1038331
-
Met
CAT
[ENA]
¡û
>W131066276
ANOK01000009
Bacillota
Calidifontibacillus oryziterrae ZYK [ANOK]
33119
33195
+
Met
CAT
[ENA]
¡û
>W131235815
AULW01000017
Bacillota
Paenibacillus pasadenensis DSM 19293 [AULW]
361
437
+
Met
CAT
[ENA]
¡û
>C171112513
CP020814
Bacillota
Halalkalibacter krulwichiae AM31D [CP020814]
988092
988167
+
Met
CAT
-
¡û
>W141193456
AYSE01000001
Bacillota
Bacillus sp. FJAT-14578 [AYSE]
1252920
1252846
-
Met
CAT
[ENA]
¡û
>W141193503
AYSE01000004
Bacillota
Bacillus sp. FJAT-14578 [AYSE]
645260
645186
-
Met
CAT
[ENA]
¡û
>W141265652
CCFJ01000045
Bacillota
Bacillus andreraoultii KW-12 [CCFJ]
110935
111011
+
Met
CAT
[ENA]
¡û
>W141265661
CCFJ01000046
Bacillota
Bacillus andreraoultii KW-12 [CCFJ]
349
425
+
Met
CAT
[ENA]
¡û
>W141267250
CCNM01000045
Bacillota
Bacillus andreraoultii KW-12 [CCNM]
110935
111011
+
Met
CAT
[ENA]
¡û
>W141267259
CCNM01000046
Bacillota
Bacillus andreraoultii KW-12 [CCNM]
349
425
+
Met
CAT
[ENA]
¡û
>WENV183729994
PJTR01000305
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
43310
43234
-
Met
CAT
[ENA]
¡û
>WENV170705885
LNAP01000568
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
40385
40309
-
Met
CAT
[ENA]
¡û
>C181215954
LS483476
Bacillota
Lederbergia lenta NCTC4824 [LS483476]
67512
67587
+
Met
CAT
-
¡û
>C191143906
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
3037952
3037876
-
Met
CAT
-
¡û
>W1910067460
BFBX01000006
Bacillota
Paenibacillus sp. 598K [BFBX]
51404
51328
-
Met
CAT
[ENA]
¡û
>W1910437763
FVYZ01000004
Bacillota
Halobacillus salinus Marseille-P2480 [FVYZ]
1135692
1135768
+
Met
CAT
[ENA]
¡û
>W1810103637
PGUW01000016
Bacillota
Bacillus sp. V5-8f [PGUW]
19930
20005
+
Met
CAT
[ENA]
¡û
>W1810144937
PIOC01000033
Bacillota
Oceanobacillus arenosus CAU 1183 [PIOC]
174334
174258
-
Met
CAT
[ENA]
¡û
>W1810144955
PIOD01000016
Bacillota
Oceanobacillus chungangensis CAU 1051 [PIOD]
321307
321231
-
Met
CAT
[ENA]
¡û
>W2010269293
CABKRX020000040
Bacillota
Bacillus massilioanorexius [CABKRX]
1089
1013
-
Met
CAT
[ENA]
¡û
>W2010272734
CABKUH020000001
Bacillota
Rubeoparvulum massiliense [CABKUH]
6006
5930
-
Met
CAT
[ENA]
¡û
>W2010273180
CABKUO020000014
Bacillota
Bacillus andreraoultii [CABKUO]
959023
959099
+
Met
CAT
[ENA]
¡û
>W2010273188
CABKUO020000014
Bacillota
Bacillus andreraoultii [CABKUO]
960750
960826
+
Met
CAT
[ENA]
¡û
>W2010404162
FVYZ01000004
Bacillota
Halobacillus salinus Marseille-P2480 [FVYZ]
1135692
1135768
+
Met
CAT
[ENA]
¡û
>W2011386949
RBVX01000003
Bacillota
Bacillus salarius IM0101 [RBVX]
196051
196127
+
Met
CAT
[ENA]
¡û
>W2011386966
RBVX01000030
Bacillota
Bacillus salarius IM0101 [RBVX]
40596
40672
+
Met
CAT
[ENA]
¡û
>W2011493696
RWIV01000001
Bacillota
Bacillus sp. HMF5848 [RWIV]
3366219
3366143
-
Met
CAT
[ENA]
¡û
>W2011677553
SRJC01000001
Bacillota
Halobacillus salinus HSL-3 [SRJC]
853397
853473
+
Met
CAT
[ENA]
¡û
>W2012332062
WIAQ01000030
Bacillota
Bacillus sp. SYSU G01002 [WIAQ]
21417
21493
+
Met
CAT
[ENA]
¡û
>W2012332084
WIAQ01000057
Bacillota
Bacillus sp. SYSU G01002 [WIAQ]
5601
5525
-
Met
CAT
[ENA]
¡û
>W2012408864
WOWQ01000001
Bacillota
Bacillus sp. A134 [WOWQ]
209222
209297
+
Met
CAT
[ENA]
¡û
>W2110284024
JACXIZ010000039
Bacillota
Paenibacillus sp. IB182496 [JACXIZ]
193
269
+
Met
CAT
[ENA]
¡û
>W2110284567
JACXSI010000070
Bacillota
Peribacillus faecalis AGMB 02131 [JACXSI]
108689
108613
-
Met
CAT
[ENA]
¡û
>W2110704543
JAIVLA010000006
Bacillota
Bacillus tianshenii KcN7-2 [JAIVLA]
394715
394791
+
Met
CAT
[ENA]
¡û
>C231248989
CP088020
Bacillota
Radiobacillus sp. 80 [CP088020]
2155276
2155200
-
Met
CAT
-
¡û
>C231268117
CP089997
Bacillota
Cytobacillus sp. CY-G [CP089997]
954175
954250
+
Met
CAT
-
¡û
>C231268147
CP089997
Bacillota
Cytobacillus sp. CY-G [CP089997]
3365357
3365281
-
Met
CAT
-
¡û
>C231298433
CP091430
Bacillota
Paenibacillus sp. PHS-Z3 [CP091430]
295785
295861
+
Met
CAT
-
¡û
>C231566707
CP115484
Bacillota
Paenibacillus sp. SYP-B4298 [CP115484]
5609568
5609644
+
Met
CAT
-
¡û
>C241059161
CP041666
Bacillota
Radiobacillus deserti TKL69 [CP041666]
2017993
2017917
-
Met
CAT
-
¡û
>W1510647559
CVPE01000001
Bacillota
Rubeoparvulum massiliense mt6 [CVPE]
6006
5930
-
Met
CAT
[ENA]
¡û
>W1510669281
CWJM01000045
Bacillota
Bacillus andreraoultii SIT1 [CWJM]
110935
111011
+
Met
CAT
[ENA]
¡û
>W1510669290
CWJM01000046
Bacillota
Bacillus andreraoultii SIT1 [CWJM]
349
425
+
Met
CAT
[ENA]
¡û
>W1511347509
JRJU01000001
Bacillota
Halalkalibacter okhensis Kh10-101 [JRJU]
122814
122740
-
Met
CAT
[ENA]
¡û
>W1511347567
JRJU01000026
Bacillota
Halalkalibacter okhensis Kh10-101 [JRJU]
1684
1611
-
Met
CAT
[ENA]
¡û
>W1610072602
BCVC01000012
Bacillota
Lederbergia lenta NBRC 16444 [BCVC]
51579
51654
+
Met
CAT
[ENA]
¡û
>W1610073383
BCVW01000005
Bacillota
Halalkalibacter krulwichiae NBRC 102362 [BCVW]
25307
25382
+
Met
CAT
[ENA]
¡û
>W1710069720
BCVC01000012
Bacillota
Lederbergia lenta NBRC 16444 [BCVC]
51579
51654
+
Met
CAT
[ENA]
¡û
>W1710070501
BCVW01000005
Bacillota
Halalkalibacter krulwichiae NBRC 102362 [BCVW]
25307
25382
+
Met
CAT
[ENA]
¡û
>W1710552388
FOGV01000006
Bacillota
Salisediminibacterium haloalkalitolerans [FOGV]
105063
105139
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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