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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.17795 (14 seq.)
>W1711391896
MEMX01000010
Myxococcota
Anaeromyxobacter sp. RBG_16_69_14 [MEMX]
87568
87656
+
Ser
CGA
[ENA]
¡û
>C000543
CP000251
Myxococcota
Anaeromyxobacter dehalogenans 2CP-C [CP000251]
4166995
4166905
-
Ser
CGA
[Ensembl]
¡û
>w022437
AAWM01000006
Myxococcota
Anaeromyxobacter sp. Fw109-5 [AAWM]
416338
416246
-
Ser
CGA
[ENA]
¡û
>WENV180100493
OAON01010237
[OAON] sediment metagenome; sediment
101
189
+
Ser
CGA
[ENA]
¢þ
>WENV180315462
OBKH01100399
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
335
247
-
Ser
CGA
[ENA]
¢þ
>W08007465
ABKC01000034
Myxococcota
Anaeromyxobacter dehalogenans 2CP-1 [ABKC]
13543
13633
+
Ser
CGA
[ENA]
¡û
>C08000644
CP000769
Myxococcota
Anaeromyxobacter sp. Fw109-5 [CP000769]
4386060
4385971
-
Ser
CGA
[Ensembl]
¡û
>C08000692
CP001131
Myxococcota
Anaeromyxobacter sp. K [CP001131]
4154763
4154676
-
Ser
CGA
[Ensembl]
¡û
>WENV170660511
JXWT01124114
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
335
247
-
Ser
CGA
[ENA]
¢þ
>W09101949
AAHD01000022
Myxococcota
Anaeromyxobacter dehalogenans 2CP-C [AAHD]
59892
59802
-
Ser
CGA
[ENA]
¡û
>W09107249
ABHX01000009
Myxococcota
Anaeromyxobacter sp. K [ABHX]
56235
56325
+
Ser
CGA
[ENA]
¡û
>C09100317
CP001359
Myxococcota
Anaeromyxobacter dehalogenans 2CP-1 [CP001359]
4195829
4195739
-
Ser
CGA
[Ensembl]
¡û
>C151093387
CP012332
Myxococcota
Vulgatibacter incomptus DSM 27710 [CP012332]
116521
116611
+
Ser
CGA
-
¡û
>W1510006507
BAZG01000197
Myxococcota
Anaeromyxobacter sp. PSR-1 [BAZG]
7647
7737
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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