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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178024 (94 seq.)
>W1710805144
LJZT01000151
Cyanobacteriota
Phormidium sp. OSCR [LJZT]
4585
4658
+
Val
GAC
[ENA]
¡û
>W1710891851
LNDC01000046
Cyanobacteriota
Geitlerinema sp. PCC 9228 [LNDC]
284
357
+
Val
GAC
[ENA]
¡û
>W131035982
AJUB01000004
Cyanobacteriota
Leptolyngbyaceae cyanobacterium JSC-12 JSC-12 [AJUB]
17026
16951
-
Val
GAC
[ENA]
¡û
>W1711088521
LSYZ01000087
Cyanobacteriota
Leptolyngbya valderiana BDU 20041 [LSYZ]
20671
20744
+
Val
GAC
[ENA]
¡û
>W1711509524
MKZR01000001
Cyanobacteriota
Moorena producens NAK12DEC93-3La [MKZR]
5680319
5680394
+
Val
GAC
[ENA]
¡û
>W1711509575
MKZS01000001
Cyanobacteriota
Moorena bouillonii PNG5-198 [MKZS]
5750353
5750428
+
Val
GAC
[ENA]
¡û
>W1711662061
MQTZ01000049
Cyanobacteriota
Leptolyngbya sp. 'hensonii' 'hensonii' [MQTZ]
31063
30990
-
Val
GAC
[ENA]
¡û
>C171064206
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
6764823
6764898
+
Val
GAC
-
¡û
>W131058614
ANFQ01000190
Cyanobacteriota
Baaleninema simplex PCC 7105 [ANFQ]
8796
8869
+
Val
GAC
[ENA]
¡û
>W131063257
ANKO01000041
Cyanobacteriota
Oscillatoria sp. PCC 10802 [ANKO]
28233
28306
+
Val
GAC
[ENA]
¡û
>C025534
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
1127199
1127126
-
Val
GAC
[Ensembl]
¡û
>WENV180013245
FMSI01059232
[FMSI] soil metagenome; Soil
5434
5361
-
Val
GAC
[ENA]
¡û
>W141038694
ALWC01000001
Cyanobacteriota
Synechococcus sp. PCC 7336 [ALWC]
658517
658592
+
Val
GAC
[ENA]
¡û
>WENV181234673
OFEU01001195
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
4551
4624
+
Val
GAC
[ENA]
¡û
>WENV181411383
OGCI01023458
[OGCI] hot springs metagenome; Hot spring water
1551
1478
-
Val
GAC
[ENA]
¡û
>WENV181414271
OGCL01000164
[OGCL] hot springs metagenome; Hot spring water
43838
43911
+
Val
GAC
[ENA]
¡û
>WENV181414577
OGCL01000699
[OGCL] hot springs metagenome; Hot spring water
32672
32745
+
Val
GAC
[ENA]
¡û
>WENV181416892
OGCL01175440
[OGCL] hot springs metagenome; Hot spring water
341
268
-
Val
GAC
[ENA]
¡û
>WENV183702555
PDVI01002816
[PDVI] alkali sediment metagenome; glacial lake sediment
965
1038
+
Val
GAC
[ENA]
¡û
>WENV170019178
BBPD01005368
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
4926
4999
+
Val
GAC
[ENA]
¡û
>WENV170020556
BBPE01011606
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
4922
4849
-
Val
GAC
[ENA]
¡û
>C181030460
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
143537
143610
+
Val
GAC
-
¡û
>C191001201
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
656982
657055
+
Val
GAC
-
¡û
>C191085208
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
173746
173819
+
Val
GAC
-
¡û
>W1910339357
FSSI01000011
Cyanobacteriota
Phormidium sp. HE10JO [FSSI]
36730
36803
+
Val
GAC
[ENA]
¡û
>W1910339404
FSSI02000011
Cyanobacteriota
Phormidium sp. HE10JO [FSSI]
36730
36803
+
Val
GAC
[ENA]
¡û
>C141007925
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
353159
353232
+
Val
GAC
-
¡û
>W1911204864
NRIU01001753
Cyanobacteriota
Geitlerinema sp. FC II [NRIU]
47581
47654
+
Val
GAC
[ENA]
¡û
>W2010072394
ATDS01000001
Cyanobacteriota
Microcoleus sp. IPPAS B-353 [ATDS]
3145256
3145329
+
Val
GAC
[ENA]
¡û
>W2010372734
CZDF01000172
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
356350
356423
+
Val
GAC
[ENA]
¡û
>W2010396032
FSSI01000011
Cyanobacteriota
Phormidium sp. HE10JO [FSSI]
36730
36803
+
Val
GAC
[ENA]
¡û
>W2010396079
FSSI02000011
Cyanobacteriota
Phormidium sp. HE10JO [FSSI]
36730
36803
+
Val
GAC
[ENA]
¡û
>W2011050175
NRIU01001753
Cyanobacteriota
Geitlerinema sp. FC II [NRIU]
47581
47654
+
Val
GAC
[ENA]
¡û
>W2011632512
SMDP01000141
Cyanobacteriota
Geitlerinema sp. P-1104 [SMDP]
904
831
-
Val
GAC
[ENA]
¡û
>W2012458142
WVIC01000012
Cyanobacteriota
Synechococcales cyanobacterium C [WVIC]
4486
4559
+
Val
GAC
[ENA]
¡û
>W2110226145
JACJNU010000046
Cyanobacteriota
Microcoleus sp. FACHB-SPT15 [JACJNU]
9897
9824
-
Val
GAC
[ENA]
¡û
>W2110227064
JACJOK010000028
Cyanobacteriota
Trichocoleus sp. FACHB-90 [JACJOK]
63799
63872
+
Val
GAC
[ENA]
¡û
>W2110227504
JACJOS010000075
Cyanobacteriota
Trichocoleus sp. FACHB-69 [JACJOS]
27162
27089
-
Val
GAC
[ENA]
¡û
>W2110227799
JACJOY010000061
Cyanobacteriota
Trichocoleus sp. FACHB-6 [JACJOY]
17983
18056
+
Val
GAC
[ENA]
¡û
>W2110227861
JACJOZ010000032
Cyanobacteriota
Phormidium sp. FACHB-592 [JACJOZ]
15516
15441
-
Val
GAC
[ENA]
¡û
>W2110228208
JACJPF010000063
Cyanobacteriota
Trichocoleus sp. FACHB-40 [JACJPF]
11498
11571
+
Val
GAC
[ENA]
¡û
>W2110228466
JACJPL010000010
Cyanobacteriota
Leptolyngbya sp. FACHB-261 [JACJPL]
10032
9959
-
Val
GAC
[ENA]
¡û
>W2110231862
JACJSC010000004
Cyanobacteriota
Planktothrix sp. FACHB-1365 [JACJSC]
33206
33279
+
Val
GAC
[ENA]
¡û
>W2110233895
JACJTV010000011
Cyanobacteriota
Coleofasciculus sp. FACHB-1120 [JACJTV]
78570
78497
-
Val
GAC
[ENA]
¡û
>W2110262142
JACSWB010000141
Cyanobacteriota
Leptolyngbya sp. CCY15150 [JACSWB]
15065
14992
-
Val
GAC
[ENA]
¡û
>C201088943
CP040671
Cyanobacteriota
Thermosynechococcus sp. CL-1 [CP040671]
2395161
2395234
+
Val
GAC
-
¡û
>C211280924
CP070960
Cyanobacteriota
Thermosynechococcus sp. TA-1 [CP070960]
351264
351191
-
Val
GAC
-
¡û
>C211402923
CP083582
Cyanobacteriota
Kovacikia sp. CCNU0001 [CP083582]
5344700
5344773
+
Val
GAC
-
¡û
>C231143118
CP075902
Cyanobacteriota
Phormidium sp. PBR-2020 [CP075902]
409216
409143
-
Val
GAC
-
¡û
>C231248738
CP088016
Cyanobacteriota
Gloeomargaritales cyanobacterium VI4D9 [CP088016]
1890857
1890930
+
Val
GAC
-
¡û
>C231396154
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
172380
172453
+
Val
GAC
-
¡û
>C231404050
CP098611
Cyanobacteriota
Phormidium yuhuli AB48 [CP098611]
2747874
2747947
+
Val
GAC
-
¡û
>C231538683
CP110848
Cyanobacteriota
Leptolyngbya sp. PKUAC-SCTB231 [CP110848]
3539231
3539158
-
Val
GAC
-
¡û
>C231552036
CP113797
Cyanobacteriota
Leptolyngbya sp. PKUAC-SCTA174 [CP113797]
4119914
4119839
-
Val
GAC
-
¡û
>C231652015
LR882967
Cyanobacteriota
Planktothrix pseudagardhii No.713 [LR882967]
2770643
2770570
-
Val
GAC
-
¡û
>C231653664
OV696605
Cyanobacteriota
Gloeomargaritales cyanobacterium VI4D9 [OV696605]
1890857
1890930
+
Val
GAC
-
¡û
>C241148900
CP051167
Cyanobacteriota
Oxynema aestuarii AP17 [CP051167]
307761
307834
+
Val
GAC
-
¡û
>C241157863
CP053661
Cyanobacteriota
Thermoleptolyngbya sichuanensis A183 [CP053661]
3880680
3880607
-
Val
GAC
-
¡û
>C241188883
CP096204
Cyanobacteriota
Thermosynechococcus sp. B0 [CP096204]
2420199
2420272
+
Val
GAC
-
¡û
>C241190861
CP096573
Cyanobacteriota
Thermosynechococcus sp. B1 [CP096573]
2396227
2396300
+
Val
GAC
-
¡û
>C241192277
CP097584
Cyanobacteriota
Thermosynechococcus sp. B3 [CP097584]
2399371
2399444
+
Val
GAC
-
¡û
>C241293673
CP130344
Cyanobacteriota
Thermosynechococcus sp. PP45 [CP130344]
352636
352563
-
Val
GAC
-
¡û
>C241293698
CP130346
Cyanobacteriota
Thermosynechococcus sp. HY596 [CP130346]
2428147
2428220
+
Val
GAC
-
¡û
>C241293749
CP130347
Cyanobacteriota
Thermosynechococcus sp. JY1339 [CP130347]
343763
343690
-
Val
GAC
-
¡û
>C241316061
CP134166
Cyanobacteriota
Thermosynechococcus sp. PP22 [CP134166]
345611
345538
-
Val
GAC
-
¡û
>C241316099
CP134167
Cyanobacteriota
Thermosynechococcus sp. PP551 [CP134167]
353662
353589
-
Val
GAC
-
¡û
>C241316137
CP134168
Cyanobacteriota
Thermosynechococcus sp. PP555 [CP134168]
353662
353589
-
Val
GAC
-
¡û
>C241316175
CP134169
Cyanobacteriota
Thermosynechococcus sp. PKX82 [CP134169]
354238
354165
-
Val
GAC
-
¡û
>C241316213
CP134170
Cyanobacteriota
Thermosynechococcus sp. PKX91 [CP134170]
354699
354626
-
Val
GAC
-
¡û
>C241316251
CP134171
Cyanobacteriota
Thermosynechococcus sp. PKX95 [CP134171]
354699
354626
-
Val
GAC
-
¡û
>C241316289
CP134172
Cyanobacteriota
Thermosynechococcus sp. WL11 [CP134172]
354698
354625
-
Val
GAC
-
¡û
>C241316327
CP134173
Cyanobacteriota
Thermosynechococcus sp. WL15 [CP134173]
354698
354625
-
Val
GAC
-
¡û
>C241316365
CP134174
Cyanobacteriota
Thermosynechococcus sp. WL17 [CP134174]
354698
354625
-
Val
GAC
-
¡û
>C241316403
CP134175
Cyanobacteriota
Thermosynechococcus sp. GLH187 [CP134175]
349878
349805
-
Val
GAC
-
¡û
>C241316441
CP134176
Cyanobacteriota
Thermosynechococcus sp. GLH333 [CP134176]
349877
349804
-
Val
GAC
-
¡û
>C241316479
CP134177
Cyanobacteriota
Thermosynechococcus sp. GLH87 [CP134177]
349879
349806
-
Val
GAC
-
¡û
>C241316517
CP134178
Cyanobacteriota
Thermosynechococcus sp. TG215 [CP134178]
353039
352966
-
Val
GAC
-
¡û
>C241316555
CP134179
Cyanobacteriota
Thermosynechococcus sp. TG218 [CP134179]
353039
352966
-
Val
GAC
-
¡û
>C241316593
CP134180
Cyanobacteriota
Thermosynechococcus sp. JY1331 [CP134180]
343763
343690
-
Val
GAC
-
¡û
>C241316631
CP134181
Cyanobacteriota
Thermosynechococcus sp. QS41 [CP134181]
355679
355606
-
Val
GAC
-
¡û
>C241316656
CP134182
Cyanobacteriota
Thermosynechococcus sp. HY591 [CP134182]
2428147
2428220
+
Val
GAC
-
¡û
>C241316694
CP134183
Cyanobacteriota
Thermosynechococcus sp. HY593 [CP134183]
2427992
2428065
+
Val
GAC
-
¡û
>C241316796
CP134200
Cyanobacteriota
Thermosynechococcus sp. QKsg1 [CP134200]
2405065
2405138
+
Val
GAC
-
¡û
>W11143156
AEPQ01000147
Cyanobacteriota
Moorena producens 3L [AEPQ]
6026
6101
+
Val
GAC
[ENA]
¡û
>W1511582912
LATL02000229
Cyanobacteriota
Limnoraphis robusta CS-951 [LATL]
16497
16570
+
Val
GAC
[ENA]
¡û
>C161002794
AP017367
Cyanobacteriota
Leptolyngbya sp. O-77 [AP017367]
3381521
3381448
-
Val
GAC
[Ensembl]
¡û
>C131004331
CP003558
Cyanobacteriota
Synechococcus sp. PCC 6312 [CP003558]
906382
906307
-
Val
GAC
[Ensembl]
¡û
>C131004439
CP003592
Cyanobacteriota
Pseudanabaena sp. PCC 7367 [CP003592]
4191931
4191856
-
Val
GAC
[Ensembl]
¡û
>C131004415
CP003591
Cyanobacteriota
Geitlerinema sp. PCC 7407 [CP003591]
766441
766368
-
Val
GAC
[Ensembl]
¡û
>C131004638
CP003607
Cyanobacteriota
Oscillatoria acuminata PCC 6304 [CP003607]
2166026
2166099
+
Val
GAC
[Ensembl]
¡û
>W1610669001
LJZT01000151
Cyanobacteriota
Phormidium sp. OSCR [LJZT]
4585
4658
+
Val
GAC
[ENA]
¡û
>W1610923060
LSYZ01000087
Cyanobacteriota
Leptolyngbya valderiana BDU 20041 [LSYZ]
20671
20744
+
Val
GAC
[ENA]
¡û
>W1610923109
LSZA01000015
Cyanobacteriota
Phormidium willei BDU 130791 [LSZA]
23786
23713
-
Val
GAC
[ENA]
¡û
>W1610992166
LWRO01000017
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
68885
68959
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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