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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178065 (69 seq.)
>W1710874835
LMNX01000002
Alphaproteobacteria
Rhizobium sp. Leaf306 [LMNX]
1048738
1048662
-
Arg
TCT
[ENA]
¡û
>W131220052
ATZB01000006
Alphaproteobacteria
Rhizobium sullae WSM1592 [ATZB]
137796
137872
+
Arg
TCT
[ENA]
¡û
>C171059065
CP017241
Alphaproteobacteria
Rhizobium etli 8C-3 [CP017241]
1818596
1818672
+
Arg
TCT
-
¡û
>W131174574
ARIO01000034
Alphaproteobacteria
Rhizobium sp. 2MFCol3.1 [ARIO]
137416
137492
+
Arg
TCT
[ENA]
¡û
>C191093706
CP032689
Alphaproteobacteria
Rhizobium sp. CCGE532 [CP032689]
1747843
1747919
+
Arg
TCT
-
¡û
>W141816512
JQJX01000007
Alphaproteobacteria
Rhizobium rhizogenes [JQJX]
142979
142903
-
Arg
TCT
[ENA]
¡û
>C09100686
CP000628
Alphaproteobacteria
Rhizobium rhizogenes K84 [CP000628, CP000629]
1730991
1731067
+
Arg
TCT
[Ensembl]
¡û
>W1810147406
PIQN01000026
Alphaproteobacteria
Rhizobium sullae HCNT1 [PIQN]
156945
156869
-
Arg
TCT
[ENA]
¡û
>W1810403657
PYJN01000013
Alphaproteobacteria
Rhizobium sp. SEMIA4064 [PYJN]
470316
470392
+
Arg
TCT
[ENA]
¡û
>W1810694704
QLMF01000004
Alphaproteobacteria
Rhizobium etli R22G [QLMF]
51025
50949
-
Arg
TCT
[ENA]
¡û
>SRA1014736
SRR023845.288735
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
138
62
-
Arg
TCT
[SRA]
>W2010509175
JAAMCR010000005
Alphaproteobacteria
Agrobacterium rhizogenes Y79/96 [JAAMCR]
768943
769019
+
Arg
TCT
[ENA]
¡û
>W2010509320
JAAMCU010000006
Alphaproteobacteria
Agrobacterium rhizogenes W 1.1 [JAAMCU]
127667
127743
+
Arg
TCT
[ENA]
¡û
>W2010509835
JAAMDF010000005
Alphaproteobacteria
Agrobacterium rhizogenes PVM 1.5 [JAAMDF]
653748
653824
+
Arg
TCT
[ENA]
¡û
>W2010509982
JAAMDI010000009
Alphaproteobacteria
Agrobacterium rhizogenes NCIB 8196 [JAAMDI]
20661
20737
+
Arg
TCT
[ENA]
¡û
>W2010510030
JAAMDJ010000005
Alphaproteobacteria
Agrobacterium rhizogenes N64/94 [JAAMDJ]
716464
716540
+
Arg
TCT
[ENA]
¡û
>W2010510126
JAAMDL010000006
Alphaproteobacteria
Agrobacterium rhizogenes L29/94 [JAAMDL]
716464
716540
+
Arg
TCT
[ENA]
¡û
>W2010510367
JAAMDQ010000007
Alphaproteobacteria
Agrobacterium rhizogenes J5a/93 [JAAMDQ]
702289
702365
+
Arg
TCT
[ENA]
¡û
>W2010510554
JAAMDU010000005
Alphaproteobacteria
Agrobacterium rhizogenes G 10.5 [JAAMDU]
658203
658279
+
Arg
TCT
[ENA]
¡û
>W2010511124
JAAMEG010000006
Alphaproteobacteria
Agrobacterium rhizogenes CM65/95 [JAAMEG]
658849
658925
+
Arg
TCT
[ENA]
¡û
>W2010511267
JAAMEJ010000004
Alphaproteobacteria
Agrobacterium rhizogenes C16/80 [JAAMEJ]
671115
671191
+
Arg
TCT
[ENA]
¡û
>W2010511707
JAAMES010000006
Alphaproteobacteria
Agrobacterium rhizogenes AP82/95 [JAAMES]
680435
680511
+
Arg
TCT
[ENA]
¡û
>W2010511750
JAAMET010000006
Alphaproteobacteria
Agrobacterium rhizogenes AL. 21.2 [JAAMET]
742094
742170
+
Arg
TCT
[ENA]
¡û
>W2010511798
JAAMEU010000005
Alphaproteobacteria
Agrobacterium rhizogenes AF44/96 [JAAMEU]
716464
716540
+
Arg
TCT
[ENA]
¡û
>W2010511848
JAAMEV010000006
Alphaproteobacteria
Agrobacterium rhizogenes A4 [JAAMEV]
790996
791072
+
Arg
TCT
[ENA]
¡û
>W2010511896
JAAMEW010000011
Alphaproteobacteria
Agrobacterium rhizogenes A1/90 [JAAMEW]
675528
675604
+
Arg
TCT
[ENA]
¡û
>W2010511991
JAAMEY010000004
Alphaproteobacteria
Agrobacterium rhizogenes A 13.1 [JAAMEY]
775402
775478
+
Arg
TCT
[ENA]
¡û
>W2010581621
JAAZQP010000004
Alphaproteobacteria
Rhizobium sp. SG741 [JAAZQP]
135428
135504
+
Arg
TCT
[ENA]
¡û
>W2010591327
JABEKW010000001
Alphaproteobacteria
Ensifer adhaerens Lc18 [JABEKW]
1431229
1431305
+
Arg
TCT
[ENA]
¡û
>W2010728252
JACIGM010000003
Alphaproteobacteria
Rhizobium mongolense SEMIA 402 [JACIGM]
598168
598244
+
Arg
TCT
[ENA]
¡û
>W2010730415
JACIIG010000015
Alphaproteobacteria
Rhizobium leucaenae SEMIA 492 [JACIIG]
182
106
-
Arg
TCT
[ENA]
¡û
>W2010730652
JACIIL010000027
Alphaproteobacteria
Rhizobium leucaenae SEMIA 4015 [JACIIL]
181
105
-
Arg
TCT
[ENA]
¡û
>W2011291972
QSNT01000002
Alphaproteobacteria
Rhizobium sp. ICMP 5592 [QSNT]
1429718
1429642
-
Arg
TCT
[ENA]
¡û
>W2011570641
SGOF01000001
Alphaproteobacteria
Agrobacterium rhizogenes LMG152 [SGOF]
921562
921486
-
Arg
TCT
[ENA]
¡û
>W2011766709
UBJO01000061
Alphaproteobacteria
Rhizobiales bacterium [UBJO]
4149
4225
+
Arg
TCT
[ENA]
¡û
>W2011767557
UBKL01000049
Alphaproteobacteria
Rhizobiales bacterium [UBKL]
31711
31635
-
Arg
TCT
[ENA]
¡û
>W2011769009
UBLW01000013
Alphaproteobacteria
Rhizobiales bacterium [UBLW]
134050
134126
+
Arg
TCT
[ENA]
¡û
>W2011769426
UBMF01000018
Alphaproteobacteria
Rhizobiales bacterium [UBMF]
3194
3270
+
Arg
TCT
[ENA]
¡û
>W2011772296
UBOX01000005
Alphaproteobacteria
Rhizobiales bacterium [UBOX]
486290
486214
-
Arg
TCT
[ENA]
¡û
>W2011772619
UBPF01000009
Alphaproteobacteria
Rhizobiales bacterium [UBPF]
521106
521030
-
Arg
TCT
[ENA]
¡û
>W2011774491
UBQW01000023
Alphaproteobacteria
Rhizobiales bacterium [UBQW]
107670
107594
-
Arg
TCT
[ENA]
¡û
>W2011782567
UBYB01000002
Alphaproteobacteria
Rhizobiales bacterium [UBYB]
139878
139802
-
Arg
TCT
[ENA]
¡û
>W2011784262
UBZN01000028
Alphaproteobacteria
Rhizobiales bacterium [UBZN]
486392
486316
-
Arg
TCT
[ENA]
¡û
>W2011788171
UCDA01000011
Alphaproteobacteria
Rhizobiales bacterium [UCDA]
101092
101016
-
Arg
TCT
[ENA]
¡û
>W2011788572
UCDJ01000014
Alphaproteobacteria
Rhizobiales bacterium [UCDJ]
150990
151066
+
Arg
TCT
[ENA]
¡û
>W2011791769
UCGC01000002
Alphaproteobacteria
Rhizobiales bacterium [UCGC]
175360
175436
+
Arg
TCT
[ENA]
¡û
>W2011796185
UCJX01000044
Alphaproteobacteria
Rhizobiales bacterium [UCJX]
121175
121099
-
Arg
TCT
[ENA]
¡û
>W2011797245
UCKV01000014
Alphaproteobacteria
Rhizobiales bacterium [UCKV]
148300
148224
-
Arg
TCT
[ENA]
¡û
>W2011798999
UCMI01000008
Alphaproteobacteria
Rhizobiales bacterium [UCMI]
188404
188328
-
Arg
TCT
[ENA]
¡û
>W2011801936
UEHB01000004
Alphaproteobacteria
Rhizobiales bacterium [UEHB]
172810
172886
+
Arg
TCT
[ENA]
¡û
>W2011802465
UEHN01000003
Alphaproteobacteria
Rhizobiales bacterium [UEHN]
58007
58083
+
Arg
TCT
[ENA]
¡û
>W2012442877
WUEY01000003
Alphaproteobacteria
Rhizobium lusitanum JHI1118 [WUEY]
175631
175555
-
Arg
TCT
[ENA]
¡û
>W2110291054
JACYUU010000001
Alphaproteobacteria
Rhizobium sp. CFBP 13726 CFBP13726 [JACYUU]
849100
849176
+
Arg
TCT
[ENA]
¡û
>W2110291364
JACYUZ010000001
Alphaproteobacteria
Rhizobium sp. CFBP 8752 CFBP8752 [JACYUZ]
1803983
1803907
-
Arg
TCT
[ENA]
¡û
>W2110554303
JAGIOT010000002
Alphaproteobacteria
Rhizobium sp. PvP014 [JAGIOT]
803634
803710
+
Arg
TCT
[ENA]
¡û
>C211061992
CP044122
Alphaproteobacteria
Agrobacterium rhizogenes LBA9402 [CP044122, CP044123]
1251398
1251474
+
Arg
TCT
-
¡û
>C211078435
CP049213
Alphaproteobacteria
Agrobacterium rhizogenes CA75/95 [CP049213, CP049214]
1937258
1937334
+
Arg
TCT
-
¡û
>C211318702
CP073110
Alphaproteobacteria
Agrobacterium rhizogenes A4 [CP073110, CP073111]
1338502
1338578
+
Arg
TCT
-
¡û
>C231485670
CP104143
Alphaproteobacteria
Rhizobium sullae WSM1592 [CP104143]
1841616
1841540
-
Arg
TCT
-
¡û
>C231485797
CP104158
Alphaproteobacteria
Rhizobium tropici CB3060 [CP104158]
1240542
1240618
+
Arg
TCT
-
¡û
>C231591570
CP117261
Alphaproteobacteria
Rhizobium tumorigenes 932 [CP117261]
1198432
1198508
+
Arg
TCT
-
¡û
>C241245048
CP121652
Alphaproteobacteria
Rhizobium sp. CB3171 [CP121652]
1225881
1225957
+
Arg
TCT
-
¡û
>C241245153
CP121662
Alphaproteobacteria
Rhizobium sp. CB3090 [CP121662]
1273520
1273596
+
Arg
TCT
-
¡û
>W1511432718
JUGS01000008
Alphaproteobacteria
Rhizobium rhizogenes CF262 [JUGS]
1377763
1377839
+
Arg
TCT
[ENA]
¡û
>W1511433484
JUHG01000011
Alphaproteobacteria
Rhizobium rhizogenes OV677 [JUHG]
159703
159779
+
Arg
TCT
[ENA]
¡û
>W1511433934
JUHP01000001
Alphaproteobacteria
Rhizobium rhizogenes YR530 [JUHP]
226708
226784
+
Arg
TCT
[ENA]
¡û
>W1610514561
FMAH01000004
Alphaproteobacteria
Rhizobium miluonense [FMAH]
218112
218188
+
Arg
TCT
[ENA]
¡û
>W1611000801
LXKQ01000001
Alphaproteobacteria
Agrobacterium sp. B133/95 [LXKQ]
567939
567863
-
Arg
TCT
[ENA]
¡û
>W1710500251
FMAH01000004
Alphaproteobacteria
Rhizobium miluonense [FMAH]
218112
218188
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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