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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178091 (28 seq.)
>SRA1004618
SRR006906.86519
metagenomic water samples (SRP000427)
132
56
-
Val
TAC
[SRA]
>C231645152
CP121795
Gammaproteobacteria
Aeromonas dhakensis DAMIAN 12594 [CP121795]
117702
117626
-
Val
TAC
-
¡û
>C231645154
CP121795
Gammaproteobacteria
Aeromonas dhakensis DAMIAN 12594 [CP121795]
117511
117435
-
Val
TAC
-
¡û
>C231645156
CP121795
Gammaproteobacteria
Aeromonas dhakensis DAMIAN 12594 [CP121795]
117320
117244
-
Val
TAC
-
¡û
>C231645441
CP121801
Gammaproteobacteria
Aeromonas dhakensis BOND 19077 [CP121801]
1648416
1648492
+
Val
TAC
-
¡û
>C231645443
CP121801
Gammaproteobacteria
Aeromonas dhakensis BOND 19077 [CP121801]
1648608
1648684
+
Val
TAC
-
¡û
>C231645559
CP121802
Gammaproteobacteria
Aeromonas dhakensis BOND 14504 [CP121802]
1719573
1719649
+
Val
TAC
-
¡û
>C231645563
CP121802
Gammaproteobacteria
Aeromonas dhakensis BOND 14504 [CP121802]
1719954
1720030
+
Val
TAC
-
¡û
>C231645771
CP121816
Gammaproteobacteria
Aeromonas veronii ANYA 19953 [CP121816]
152987
152911
-
Val
TAC
-
¡û
>C231645773
CP121816
Gammaproteobacteria
Aeromonas veronii ANYA 19953 [CP121816]
152796
152720
-
Val
TAC
-
¡û
>C231645775
CP121816
Gammaproteobacteria
Aeromonas veronii ANYA 19953 [CP121816]
152603
152527
-
Val
TAC
-
¡û
>C231645777
CP121816
Gammaproteobacteria
Aeromonas veronii ANYA 19953 [CP121816]
152412
152336
-
Val
TAC
-
¡û
>C231645797
CP121817
Gammaproteobacteria
Aeromonas veronii ANYA 19170 [CP121817]
461725
461801
+
Val
TAC
-
¡û
>C231645799
CP121817
Gammaproteobacteria
Aeromonas veronii ANYA 19170 [CP121817]
461920
461996
+
Val
TAC
-
¡û
>C231645803
CP121817
Gammaproteobacteria
Aeromonas veronii ANYA 19170 [CP121817]
462307
462383
+
Val
TAC
-
¡û
>C231646384
CP121837
Gammaproteobacteria
Aeromonas veronii ANYA 18263 [CP121837]
214212
214136
-
Val
TAC
-
¡û
>C231646780
CP121843
Gammaproteobacteria
Aeromonas veronii ANYA 16549 [CP121843]
615650
615726
+
Val
TAC
-
¡û
>C231646910
CP121845
Gammaproteobacteria
Aeromonas veronii ANYA 15694 [CP121845]
1828221
1828297
+
Val
TAC
-
¡û
>C231646912
CP121845
Gammaproteobacteria
Aeromonas veronii ANYA 15694 [CP121845]
1828426
1828502
+
Val
TAC
-
¡û
>C231646914
CP121845
Gammaproteobacteria
Aeromonas veronii ANYA 15694 [CP121845]
1828619
1828695
+
Val
TAC
-
¡û
>C231646916
CP121845
Gammaproteobacteria
Aeromonas veronii ANYA 15694 [CP121845]
1828812
1828888
+
Val
TAC
-
¡û
>C231646918
CP121845
Gammaproteobacteria
Aeromonas veronii ANYA 15694 [CP121845]
1829006
1829082
+
Val
TAC
-
¡û
>C231647026
CP121846
Gammaproteobacteria
Aeromonas veronii ANYA 15110 [CP121846]
563127
563203
+
Val
TAC
-
¡û
>C231647028
CP121846
Gammaproteobacteria
Aeromonas veronii ANYA 15110 [CP121846]
563320
563396
+
Val
TAC
-
¡û
>C231647208
CP121848
Gammaproteobacteria
Aeromonas veronii ANYA 14430 [CP121848]
2028216
2028140
-
Val
TAC
-
¡û
>C231647501
CP121854
Gammaproteobacteria
Aeromonas veronii ANYA 13997 [CP121854]
474567
474643
+
Val
TAC
-
¡û
>C231647505
CP121854
Gammaproteobacteria
Aeromonas veronii ANYA 13997 [CP121854]
474953
475029
+
Val
TAC
-
¡û
>C231647509
CP121854
Gammaproteobacteria
Aeromonas veronii ANYA 13997 [CP121854]
475339
475415
+
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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