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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178213 (77 seq.)
>W1710822417
LKUW01000023
Betaproteobacteria
Paracidovorax citrulli [LKUW]
81637
81713
+
Arg
TCT
[ENA]
¡û
>W1710861470
LMDQ01000014
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
871631
871707
+
Arg
TCT
[ENA]
¡û
>W1710867563
LMIJ01000021
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
6512
6588
+
Arg
TCT
[ENA]
¡û
>W1710872413
LMLY01000029
Betaproteobacteria
Acidovorax sp. Leaf76 [LMLY]
37390
37314
-
Arg
TCT
[ENA]
¡û
>W1710875969
LMOV01000012
Betaproteobacteria
Acidovorax sp. Leaf160 [LMOV]
490394
490470
+
Arg
TCT
[ENA]
¡û
>W1711073673
LSIU01000679
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
13454
13378
-
Arg
TCT
[ENA]
¡û
>W1711075829
LSKS01000531
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
4315
4239
-
Arg
TCT
[ENA]
¡û
>W1711386797
MEFU01000022
Betaproteobacteria
Comamonadaceae bacterium SCN 68-20 [MEFU]
14851
14927
+
Arg
TCT
[ENA]
¡û
>W1711386825
MEFV01000001
Betaproteobacteria
Comamonas sp. SCN 67-35 [MEFV]
13875
13799
-
Arg
TCT
[ENA]
¡û
>W1711504565
MKUR01000036
Betaproteobacteria
Burkholderiales bacterium 66-26 [MKUR]
13814
13738
-
Arg
TCT
[ENA]
¡û
>W1711504618
MKUS01000057
Betaproteobacteria
Burkholderiales bacterium 68-12 [MKUS]
28728
28804
+
Arg
TCT
[ENA]
¡û
>W1711504646
MKUT01000216
Betaproteobacteria
Burkholderiales bacterium 68-20 [MKUT]
6468
6544
+
Arg
TCT
[ENA]
¡û
>W1711575592
MNIU01000047
Betaproteobacteria
Delftia sp. 13_1_20CM_4_67_18 [MNIU]
180786
180710
-
Arg
TCT
[ENA]
¡û
>W131002599
AGYY01000010
Betaproteobacteria
Delftia acidovorans CCUG 15835 [AGYY]
209935
210011
+
Arg
TCT
[ENA]
¡û
>W131045657
AMRP01000364
Betaproteobacteria
Paracidovorax citrulli ZJU1106 [AMRP]
1511
1587
+
Arg
TCT
[ENA]
¡û
>C000142
CP000512
Betaproteobacteria
Paracidovorax citrulli AAC00-1 [CP000512]
1945377
1945301
-
Arg
TCT
[Ensembl]
¡û
>WENV180283728
OBID01002095
[OBID] metagenome; sludge
6202
6126
-
Arg
TCT
[ENA]
¢þ
>WENV180692487
OCZS010568568
[OCZS] soil metagenome; soil
121
197
+
Arg
TCT
[ENA]
¢þ
>WENV181167853
OEIU01090233
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
565
489
-
Arg
TCT
[ENA]
¢þ
>WENV181307962
OFIS01000060
[OFIS] sludge metagenome; sludge
35085
35009
-
Arg
TCT
[ENA]
¢þ
>WENV181311156
OFJB01000078
[OFJB] sludge metagenome; sludge
32558
32482
-
Arg
TCT
[ENA]
¢þ
>WENV181312420
OFJB01111141
[OFJB] sludge metagenome; sludge
405
481
+
Arg
TCT
[ENA]
¢þ
>WENV181401493
OFTX01000429
[OFTX] sludge metagenome; sludge
8255
8179
-
Arg
TCT
[ENA]
¢þ
>WENV181401649
OFTX01002119
[OFTX] sludge metagenome; sludge
2766
2842
+
Arg
TCT
[ENA]
¢þ
>WENV181402069
OFTY01000079
[OFTY] sludge metagenome; sludge
13791
13715
-
Arg
TCT
[ENA]
¢þ
>WENV181732144
OGQD01012580
[OGQD] human gut metagenome; faeces
1421
1345
-
Arg
TCT
[ENA]
¢þ
>W141238128
BBJX01000004
Betaproteobacteria
Comamonas granuli NBRC 101663 [BBJX]
383797
383721
-
Arg
TCT
[ENA]
¡û
>WENV170011516
APMI01071402
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1395
1471
+
Arg
TCT
[ENA]
¢þ
>WENV170011731
APMI01086385
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
754
830
+
Arg
TCT
[ENA]
¢þ
>WENV170708768
LNAQ01000863
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2441
2517
+
Arg
TCT
[ENA]
¢þ
>WENV170711488
LNFM01005498
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3872
3948
+
Arg
TCT
[ENA]
¢þ
>C181088963
CP023687
Betaproteobacteria
Paracidovorax citrulli KACC17005 [CP023687]
2607707
2607783
+
Arg
TCT
-
¡û
>C191063792
CP029373
Betaproteobacteria
Paracidovorax citrulli M6 [CP029373]
3779456
3779380
-
Arg
TCT
-
¡û
>C191099901
CP033069
Betaproteobacteria
Acidovorax sp. 1608163 [CP033069]
1461095
1461019
-
Arg
TCT
-
¡û
>W141701616
JMKU01000007
Betaproteobacteria
Paracidovorax oryzae ATCC 19882 [JMKU]
160170
160246
+
Arg
TCT
[ENA]
¡û
>W09106099
AASX01000023
Betaproteobacteria
Paracidovorax citrulli subsp. citrulli AAC00-1 [AASX]
67582
67506
-
Arg
TCT
[ENA]
¡û
>W141789915
JOUB01000005
Betaproteobacteria
Delftia acidovorans [JOUB]
2308295
2308219
-
Arg
TCT
[ENA]
¡û
>W1910803591
MTBE01000017
Betaproteobacteria
Diaphorobacter sp. LR2014-1 [MTBE]
4850
4774
-
Arg
TCT
[ENA]
¡û
>W1910803592
MTBE01000018
Betaproteobacteria
Diaphorobacter sp. LR2014-1 [MTBE]
1653
1729
+
Arg
TCT
[ENA]
¡û
>W1910972125
NKDB02000005
Betaproteobacteria
Alicycliphilus denitrificans BQ1 [NKDB]
188722
188646
-
Arg
TCT
[ENA]
¡û
>W1911497653
OCRO01000001
Betaproteobacteria
Delftia acidovorans ATCC 11299b [OCRO]
3285567
3285643
+
Arg
TCT
[ENA]
¡û
>W1810071598
PEEV01000001
Betaproteobacteria
Acidovorax sp. 56 [PEEV]
1799834
1799910
+
Arg
TCT
[ENA]
¡û
>W1810072470
PEFJ01000001
Betaproteobacteria
Acidovorax sp. 62 [PEFJ]
2466703
2466779
+
Arg
TCT
[ENA]
¡û
>W1810088941
PGEI01000007
Betaproteobacteria
Comamonadaceae bacterium CD01 [PGEI]
20495
20419
-
Arg
TCT
[ENA]
¡û
>W1810088983
PGEJ01000010
Betaproteobacteria
Alicycliphilus denitrificans CD02 [PGEJ]
131809
131885
+
Arg
TCT
[ENA]
¡û
>W1810573151
QEKN01000001
Betaproteobacteria
Paracidovorax citrulli AAC00-1 #5684 [QEKN]
4279622
4279546
-
Arg
TCT
[ENA]
¡û
>W1810609629
QGUB01000001
Betaproteobacteria
Melaminivora alkalimesophila DSM 26006 [QGUB]
223113
223037
-
Arg
TCT
[ENA]
¡û
>W1810677449
QKMS01000002
Betaproteobacteria
Acidovorax sp. OV235 [QKMS]
208765
208689
-
Arg
TCT
[ENA]
¡û
>W1810696125
QLTA01000004
Betaproteobacteria
Paracidovorax anthurii CFPB 3232 [QLTA]
2548
2472
-
Arg
TCT
[ENA]
¡û
>W1810885124
QUNC01000001
Betaproteobacteria
Paracidovorax citrulli AAC00-1 #5596 [QUNC]
2605326
2605402
+
Arg
TCT
[ENA]
¡û
>W10110533
ADCB01000002
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
279714
279638
-
Arg
TCT
[ENA]
¡û
>C11100170
CP002521
Betaproteobacteria
Paracidovorax avenae ATCC 19860 [CP002521]
1919355
1919279
-
Arg
TCT
[Ensembl]
¡û
>W11112970
ADCB01000002
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
279714
279638
-
Arg
TCT
[ENA]
¡û
>W1510742415
CYIG01000005
Betaproteobacteria
Paenacidovorax caeni R-24608 [CYIG]
94055
93979
-
Arg
TCT
[ENA]
¡û
>W1511503071
JXDJ01000023
Betaproteobacteria
Paracidovorax citrulli tw6 [JXDJ]
180009
179933
-
Arg
TCT
[ENA]
¡û
>W1511527430
JYHM01000018
Betaproteobacteria
Paracidovorax citrulli pslbtw65 [JYHM]
89186
89110
-
Arg
TCT
[ENA]
¡û
>W1511583317
LATT01000235
Betaproteobacteria
Delftia tsuruhatensis CM13 [LATT]
42265
42189
-
Arg
TCT
[ENA]
¡û
>W1511625821
LCZH01000023
Betaproteobacteria
Delftia tsuruhatensis MTQ3 [LCZH]
233322
233246
-
Arg
TCT
[ENA]
¡û
>W11156547
AFBG01000018
Betaproteobacteria
Acidovorax radicis N35 [AFBG]
527294
527218
-
Arg
TCT
[ENA]
¡û
>W11170748
AFPT01000008
Betaproteobacteria
Paracidovorax oryzae subsp. avenae RS-1 [AFPT]
13740
13664
-
Arg
TCT
[ENA]
¡û
>W1610077614
BCZP01000005
Betaproteobacteria
Delftia acidovorans NBRC 14950 [BCZP]
314870
314946
+
Arg
TCT
[ENA]
¡û
>W1610599185
LFJT01000018
Betaproteobacteria
Delftia sp. JD2 [LFJT]
35727
35803
+
Arg
TCT
[ENA]
¡û
>W1610686282
LKUW01000023
Betaproteobacteria
Paracidovorax citrulli [LKUW]
81637
81713
+
Arg
TCT
[ENA]
¡û
>W1610723816
LMDQ01000014
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
871631
871707
+
Arg
TCT
[ENA]
¡û
>W1610729909
LMIJ01000021
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
6512
6588
+
Arg
TCT
[ENA]
¡û
>W1610734759
LMLY01000029
Betaproteobacteria
Acidovorax sp. Leaf76 [LMLY]
37390
37314
-
Arg
TCT
[ENA]
¡û
>W1610738315
LMOV01000012
Betaproteobacteria
Acidovorax sp. Leaf160 [LMOV]
490394
490470
+
Arg
TCT
[ENA]
¡û
>W1610912978
LSIU01000679
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
13454
13378
-
Arg
TCT
[ENA]
¡û
>W1610915134
LSKS01000531
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
4315
4239
-
Arg
TCT
[ENA]
¡û
>W1710075252
BCZP01000005
Betaproteobacteria
Delftia acidovorans NBRC 14950 [BCZP]
314870
314946
+
Arg
TCT
[ENA]
¡û
>W1710519730
FNEY01000012
Betaproteobacteria
Paracidovorax citrulli [FNEY]
54998
54922
-
Arg
TCT
[ENA]
¡û
>W1710525311
FNJL01000010
Betaproteobacteria
Paracidovorax cattleyae [FNJL]
59777
59701
-
Arg
TCT
[ENA]
¡û
>W1710530909
FNPE01000025
Betaproteobacteria
Delftia lacustris [FNPE]
51920
51996
+
Arg
TCT
[ENA]
¡û
>W1710559449
FOMQ01000010
Betaproteobacteria
Paracidovorax konjaci [FOMQ]
1892
1816
-
Arg
TCT
[ENA]
¡û
>W1710561130
FONX01000005
Betaproteobacteria
Paracidovorax wautersii [FONX]
59645
59569
-
Arg
TCT
[ENA]
¡û
>W1710578853
FPBX01000002
Betaproteobacteria
Paenacidovorax caeni [FPBX]
125082
125158
+
Arg
TCT
[ENA]
¡û
>W1710720543
LFJT01000018
Betaproteobacteria
Delftia sp. JD2 [LFJT]
35727
35803
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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