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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178289 (20 seq.)
>W131050212
AMWG01000075
Planctomycetota
Rhodopirellula baltica SWK14 [AMWG]
72372
72296
-
Arg
TCT
[ENA]
¡û
>W131065040
ANMO01000212
Planctomycetota
Rhodopirellula europaea 6C [ANMO]
53951
54025
+
Arg
TCT
[ENA]
¡û
>C016587
BX119912
Planctomycetota
Rhodopirellula baltica [BX119912]
15141
15217
+
Arg
TCT
[Ensembl]
¡û
>w027434
ABCE01000013
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
132337
132261
-
Arg
TCT
[ENA]
¡û
>WENV181163027
OEIO01065700
[OEIO] marine metagenome; sea ice
306
380
+
Arg
TCT
[ENA]
¡û
>WENV170121143
CENL01054026
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
136711
136784
+
Arg
TCT
[ENA]
¡û
>WENV170130791
CENR01029581
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
384
308
-
Arg
TCT
[ENA]
¡û
>W1910938959
NIZW01000029
Planctomycetota
Rhodopirellula bahusiensis SWK21 [NIZW]
68604
68679
+
Arg
TCT
[ENA]
¡û
>W2010983002
NIZW01000029
Planctomycetota
Rhodopirellula bahusiensis SWK21 [NIZW]
68604
68679
+
Arg
TCT
[ENA]
¡û
>W2011610656
SJPP01000003
Planctomycetota
Planctomycetes bacterium CA54 [SJPP]
907015
907089
+
Arg
TCT
[ENA]
¡û
>W2012143771
VTSR01000032
Planctomycetota
Gimesia sp. JC646 [VTSR]
986495
986569
+
Arg
TCT
[ENA]
¡û
>C231610539
CP118225
Planctomycetota
Rhodopirellula sp. P2 [CP118225]
6360041
6360115
+
Arg
TCT
-
¡û
>C241043967
CP036276
Planctomycetota
Symmachiella dynata Mal52 [CP036276]
5120720
5120794
+
Arg
TCT
-
¡û
>C241044024
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
3353478
3353552
+
Arg
TCT
-
¡û
>C241044518
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
1512205
1512131
-
Arg
TCT
-
¡û
>C241069932
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
3312325
3312399
+
Arg
TCT
-
¡û
>C241083601
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
404703
404629
-
Arg
TCT
-
¡û
>C241083645
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
4386855
4386781
-
Arg
TCT
-
¡û
>W1511646545
LECT01000052
Planctomycetota
Rhodopirellula islandica K833 [LECT]
30324
30398
+
Arg
TCT
[ENA]
¡û
>W11156010
AFAR01000054
Planctomycetota
Rhodopirellula baltica WH47 [AFAR]
6740
6814
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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