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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178291 (11 seq.)
>w027414
ABCE01000001
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
204659
204583
-
Pro
CGG
[ENA]
¡û
>WENV170014914
AZIC01004542
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
736
662
-
Pro
CGG
[ENA]
¡û
>WENV170121186
CENL01054722
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
263408
263334
-
Pro
CGG
[ENA]
¡û
>W2011610948
SJPV01000009
Planctomycetota
Planctomycetes bacterium Poly41 [SJPV]
96769
96695
-
Pro
CGG
[ENA]
¡û
>W2012143753
VTSR01000007
Planctomycetota
Gimesia sp. JC646 [VTSR]
623513
623587
+
Pro
CGG
[ENA]
¡û
>C241044031
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
4070402
4070476
+
Pro
CGG
-
¡û
>C241044525
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
819412
819338
-
Pro
CGG
-
¡û
>C241044549
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
4066611
4066685
+
Pro
CGG
-
¡û
>C241069938
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
4120347
4120421
+
Pro
CGG
-
¡û
>C241083576
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
7757140
7757066
-
Pro
CGG
-
¡û
>C241083651
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
3578857
3578783
-
Pro
CGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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