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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178292 (11 seq.)
>w027458
ABCE01000045
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
43483
43559
+
Arg
ACG
[ENA]
¡û
>WENV170014936
AZIC01004572
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
56
130
+
Arg
ACG
[ENA]
¡û
>WENV170121033
CENL01039568
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
19227
19154
-
Arg
ACG
[ENA]
¡û
>W2012143741
VTSR01000005
Planctomycetota
Gimesia sp. JC646 [VTSR]
23628
23554
-
Arg
ACG
[ENA]
¡û
>C241043942
CP036275
Planctomycetota
Maioricimonas rarisocia Mal4 [CP036275]
2263344
2263270
-
Arg
ACG
-
¡û
>C241044048
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
6986559
6986485
-
Arg
ACG
-
¡û
>C241044497
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
7247550
7247476
-
Arg
ACG
-
¡û
>C241044568
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
6681696
6681623
-
Arg
ACG
-
¡û
>C241069957
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
6899151
6899077
-
Arg
ACG
-
¡û
>C241083567
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
4652599
4652673
+
Arg
ACG
-
¡û
>C241083615
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
798932
799006
+
Arg
ACG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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