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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178293 (10 seq.)
>w027417
ABCE01000002
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
276441
276517
+
Val
GAC
[ENA]
¡û
>WENV170014832
AZIC01000057
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
1451
1377
-
Val
GAC
[ENA]
¡û
>WENV170121156
CENL01054248
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4488
4562
+
Val
GAC
[ENA]
¡û
>SRA1050572
SRR035095.295337
454 Sequencing (SRP001816)
445
371
-
Val
GAC
[SRA]
>W2012143746
VTSR01000006
Planctomycetota
Gimesia sp. JC646 [VTSR]
124693
124619
-
Val
GAC
[ENA]
¡û
>C241044055
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
5422593
5422519
-
Val
GAC
-
¡û
>C241044573
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
5377450
5377376
-
Val
GAC
-
¡û
>C241069962
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
5576818
5576744
-
Val
GAC
-
¡û
>C241083574
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
6091515
6091589
+
Val
GAC
-
¡û
>C241083620
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
2121241
2121315
+
Val
GAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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