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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178299 (92 seq.)
>W1710785264
LJHS01000004
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
200985
201061
+
Pro
CGG
[ENA]
¡û
>W1710860610
LMDA01000001
Alphaproteobacteria
Rhizobium sp. Root1212 [LMDA]
421339
421263
-
Pro
CGG
[ENA]
¡û
>W1710862300
LMEG01000045
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
408216
408140
-
Pro
CGG
[ENA]
¡û
>W1710862604
LMEN01000002
Alphaproteobacteria
Ensifer sp. Root1298 [LMEN]
138187
138111
-
Pro
CGG
[ENA]
¡û
>W1710862923
LMES01000002
Alphaproteobacteria
Ensifer sp. Root1312 [LMES]
283284
283208
-
Pro
CGG
[ENA]
¡û
>W1710864720
LMGC01000023
Alphaproteobacteria
Ensifer sp. Root558 [LMGC]
481093
481017
-
Pro
CGG
[ENA]
¡û
>W1710866893
LMHV01000043
Alphaproteobacteria
Rhizobium sp. Root708 [LMHV]
368248
368324
+
Pro
CGG
[ENA]
¡û
>W1710867536
LMII01000042
Alphaproteobacteria
Ensifer sp. Root74 [LMII]
139403
139327
-
Pro
CGG
[ENA]
¡û
>W1710868519
LMJD01000001
Alphaproteobacteria
Rhizobium sp. Root268 [LMJD]
421217
421141
-
Pro
CGG
[ENA]
¡û
>W1710868790
LMJJ01000012
Alphaproteobacteria
Ensifer sp. Root278 [LMJJ]
135011
134935
-
Pro
CGG
[ENA]
¡û
>W1710868920
LMJM01000023
Alphaproteobacteria
Ensifer sp. Root954 [LMJM]
329585
329661
+
Pro
CGG
[ENA]
¡û
>W1710876394
LMPE01000015
Alphaproteobacteria
Rhizobium sp. Leaf341 [LMPE]
993727
993651
-
Pro
CGG
[ENA]
¡û
>W1710877480
LMQD01000006
Alphaproteobacteria
Rhizobium sp. Leaf383 [LMQD]
31994
32070
+
Pro
CGG
[ENA]
¡û
>W1710877561
LMQE01000012
Alphaproteobacteria
Rhizobium sp. Leaf384 [LMQE]
20351
20275
-
Pro
CGG
[ENA]
¡û
>W1710987732
LPUX01000053
Alphaproteobacteria
Sinorhizobium glycinis [LPUX]
520509
520433
-
Pro
CGG
[ENA]
¡û
>W1711233479
LYBW01000062
Alphaproteobacteria
Sinorhizobium alkalisoli YIC4027 [LYBW]
239138
239214
+
Pro
CGG
[ENA]
¡û
>W1711314167
MAUG01000002
Alphaproteobacteria
Ensifer adhaerens [MAUG]
160487
160411
-
Pro
CGG
[ENA]
¡û
>W1711337818
MBSO01000022
Alphaproteobacteria
Ensifer sp. LC11 [MBSO]
71453
71529
+
Pro
CGG
[ENA]
¡û
>W1711337866
MBSP01000022
Alphaproteobacteria
Ensifer sp. LC13 [MBSP]
71453
71529
+
Pro
CGG
[ENA]
¡û
>W1711337946
MBSQ01000061
Alphaproteobacteria
Ensifer sp. LC14 [MBSQ]
10030
9954
-
Pro
CGG
[ENA]
¡û
>W1711338123
MBSU01000022
Alphaproteobacteria
Ensifer sp. LC499 [MBSU]
10282
10206
-
Pro
CGG
[ENA]
¡û
>W1711353336
MDDW01000029
Alphaproteobacteria
Rhizobium sp. LCM 4573 [MDDW]
268617
268693
+
Pro
CGG
[ENA]
¡û
>W131163297
AQZQ01000005
Alphaproteobacteria
Ensifer sp. BR816 BR816 [AQZQ]
715152
715228
+
Pro
CGG
[ENA]
¡û
>W1711489173
MKIO01000031
Alphaproteobacteria
Xaviernesmea rhizosphaerae MH17 [MKIO]
252736
252660
-
Pro
CGG
[ENA]
¡û
>W1711501853
MKSB01000275
Alphaproteobacteria
Rhizobiales bacterium 63-7 [MKSB]
50098
50022
-
Pro
CGG
[ENA]
¡û
>W1711679635
MRVD01000004
Alphaproteobacteria
Ensifer adhaerens [MRVD]
165374
165298
-
Pro
CGG
[ENA]
¡û
>W1711765476
MUXO01000034
Alphaproteobacteria
Pseudorhizobium flavum [MUXO]
909797
909873
+
Pro
CGG
[ENA]
¡û
>W141041999
AMCX01000017
Alphaproteobacteria
Sinorhizobium fredii GR64 [AMCX]
66730
66654
-
Pro
CGG
[ENA]
¡û
>WENV181414896
OGCL01002071
[OGCL] hot springs metagenome; Hot spring water
6563
6639
+
Pro
CGG
[ENA]
¢þ
>WENV183742388
PJUH01021373
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
195
271
+
Pro
CGG
[ENA]
¢þ
>C181075765
CP023067
Alphaproteobacteria
Sinorhizobium sojae CCBAU 05684 [CP023067]
562189
562265
+
Pro
CGG
-
¡û
>C181075816
CP023070
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 [CP023070]
610669
610745
+
Pro
CGG
-
¡û
>C181176236
CP029231
Alphaproteobacteria
Sinorhizobium fredii CCBAU 45436 [CP029231]
645234
645310
+
Pro
CGG
-
¡û
>W141817927
JQLD01000005
Alphaproteobacteria
Rhizobium sp. YR519 [JQLD]
411410
411334
-
Pro
CGG
[ENA]
¡û
>W1910182996
BJNI01000033
Alphaproteobacteria
Sinorhizobium fredii NBRC 14780 [BJNI]
19930
19854
-
Pro
CGG
[ENA]
¡û
>W1910199405
FBVY01000018
Alphaproteobacteria
Agrobacterium genomosp. 2 2 str. CFBP 5494 [FBVY]
42793
42869
+
Pro
CGG
[ENA]
¡û
>W1910891739
NEXT01000016
Alphaproteobacteria
Sinorhizobium sp. LM21 [NEXT]
78133
78209
+
Pro
CGG
[ENA]
¡û
>W1911409690
NWTC01000009
Alphaproteobacteria
Sinorhizobium fredii PCH1 [NWTC]
45934
46010
+
Pro
CGG
[ENA]
¡û
>W1911409947
NWTH01000003
Alphaproteobacteria
Sinorhizobium sp. BJ1 [NWTH]
354297
354221
-
Pro
CGG
[ENA]
¡û
>W1911614469
POVM01000003
Alphaproteobacteria
Sinorhizobium meliloti 320 [POVM]
78204
78280
+
Pro
CGG
[ENA]
¡û
>W1810197038
PNFP01000018
Alphaproteobacteria
Ensifer adhaerens ST2 [PNFP]
139177
139101
-
Pro
CGG
[ENA]
¡û
>W1810671968
QJTB01000001
Alphaproteobacteria
Ensifer adhaerens WJB133 25_10 [QJTB]
468502
468426
-
Pro
CGG
[ENA]
¡û
>W1810675924
QKLQ01000001
Alphaproteobacteria
Ensifer sp. AP48 [QKLQ]
862728
862804
+
Pro
CGG
[ENA]
¡û
>W1810696387
QLTH01000001
Alphaproteobacteria
Ensifer adhaerens AG1206 [QLTH]
138836
138760
-
Pro
CGG
[ENA]
¡û
>C151098031
FO082820
Alphaproteobacteria
Pseudorhizobium banfieldiae NT-26 [FO082820]
765951
766027
+
Pro
CGG
[Ensembl]
¡û
>W1511403323
JTLA01000056
Alphaproteobacteria
Ensifer sp. ZNC0028 [JTLA]
9145
9221
+
Pro
CGG
[ENA]
¡û
>W1511591781
LBHV01000007
Alphaproteobacteria
Rhizobium sp. LC145 [LBHV]
261075
260999
-
Pro
CGG
[ENA]
¡û
>W1511694130
LGAP01000015
Alphaproteobacteria
Ensifer adhaerens SD006 [LGAP]
55807
55883
+
Pro
CGG
[ENA]
¡û
>C121014574
CP003563
Alphaproteobacteria
Sinorhizobium fredii USDA 257 [CP003563]
715294
715370
+
Pro
CGG
[Ensembl]
¡û
>C121018122
HE616890
Alphaproteobacteria
Sinorhizobium fredii HH103 [HE616890]
709220
709296
+
Pro
CGG
[Ensembl]
¡û
>W121044104
AHZC01000017
Alphaproteobacteria
Rhizobium sp. PDO1-076 [AHZC]
11056
11132
+
Pro
CGG
[ENA]
¡û
>W121065985
AJQM01000002
Alphaproteobacteria
Sinorhizobium fredii CCBAU 05557 [AJQM]
9823
9899
+
Pro
CGG
[ENA]
¡û
>W121066114
AJQO01000091
Alphaproteobacteria
Sinorhizobium fredii CCBAU 45436 [AJQO]
134833
134757
-
Pro
CGG
[ENA]
¡û
>W121066198
AJQQ01000031
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83643 [AJQQ]
9826
9902
+
Pro
CGG
[ENA]
¡û
>W121066242
AJQR01000102
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 [AJQR]
14694
14618
-
Pro
CGG
[ENA]
¡û
>W121066291
AJQS01000032
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83753 [AJQS]
9826
9902
+
Pro
CGG
[ENA]
¡û
>W121066336
AJQT01000017
Alphaproteobacteria
Sinorhizobium sojae CCBAU 05684 [AJQT]
191706
191782
+
Pro
CGG
[ENA]
¡û
>W1610024598
AUSY01000024
Alphaproteobacteria
Sinorhizobium sp. GW3 [AUSY]
78519
78595
+
Pro
CGG
[ENA]
¡û
>W1610024642
AUSZ01000001
Alphaproteobacteria
Sinorhizobium sp. GL28 [AUSZ]
381309
381233
-
Pro
CGG
[ENA]
¡û
>W1610024688
AUTA01000001
Alphaproteobacteria
Sinorhizobium sp. Sb3 [AUTA]
325869
325945
+
Pro
CGG
[ENA]
¡û
>W1610024775
AUTB01000084
Alphaproteobacteria
Sinorhizobium sp. GL2 [AUTB]
327736
327812
+
Pro
CGG
[ENA]
¡û
>W1610024823
AUTC01000189
Alphaproteobacteria
Sinorhizobium fredii USDA 205 [AUTC]
218764
218688
-
Pro
CGG
[ENA]
¡û
>W1610649070
LJHS01000004
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
200985
201061
+
Pro
CGG
[ENA]
¡û
>W1610722956
LMDA01000001
Alphaproteobacteria
Rhizobium sp. Root1212 [LMDA]
421339
421263
-
Pro
CGG
[ENA]
¡û
>W1610724646
LMEG01000045
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
408216
408140
-
Pro
CGG
[ENA]
¡û
>W1610724950
LMEN01000002
Alphaproteobacteria
Ensifer sp. Root1298 [LMEN]
138187
138111
-
Pro
CGG
[ENA]
¡û
>W1610725269
LMES01000002
Alphaproteobacteria
Ensifer sp. Root1312 [LMES]
283284
283208
-
Pro
CGG
[ENA]
¡û
>W1610727066
LMGC01000023
Alphaproteobacteria
Ensifer sp. Root558 [LMGC]
481093
481017
-
Pro
CGG
[ENA]
¡û
>W1610729239
LMHV01000043
Alphaproteobacteria
Rhizobium sp. Root708 [LMHV]
368248
368324
+
Pro
CGG
[ENA]
¡û
>W1610729882
LMII01000042
Alphaproteobacteria
Ensifer sp. Root74 [LMII]
139403
139327
-
Pro
CGG
[ENA]
¡û
>W1610730865
LMJD01000001
Alphaproteobacteria
Rhizobium sp. Root268 [LMJD]
421217
421141
-
Pro
CGG
[ENA]
¡û
>W1610731136
LMJJ01000012
Alphaproteobacteria
Ensifer sp. Root278 [LMJJ]
135011
134935
-
Pro
CGG
[ENA]
¡û
>W1610731266
LMJM01000023
Alphaproteobacteria
Ensifer sp. Root954 [LMJM]
329585
329661
+
Pro
CGG
[ENA]
¡û
>W1610738740
LMPE01000015
Alphaproteobacteria
Rhizobium sp. Leaf341 [LMPE]
993727
993651
-
Pro
CGG
[ENA]
¡û
>W1610739826
LMQD01000006
Alphaproteobacteria
Rhizobium sp. Leaf383 [LMQD]
31994
32070
+
Pro
CGG
[ENA]
¡û
>W1610739907
LMQE01000012
Alphaproteobacteria
Rhizobium sp. Leaf384 [LMQE]
20351
20275
-
Pro
CGG
[ENA]
¡û
>W1610842676
LPUX01000053
Alphaproteobacteria
Sinorhizobium glycinis [LPUX]
520509
520433
-
Pro
CGG
[ENA]
¡û
>W1611059042
MAUG01000002
Alphaproteobacteria
Ensifer adhaerens [MAUG]
160487
160411
-
Pro
CGG
[ENA]
¡û
>W1611066746
MBSO01000022
Alphaproteobacteria
Ensifer sp. LC11 [MBSO]
71453
71529
+
Pro
CGG
[ENA]
¡û
>W1611066794
MBSP01000022
Alphaproteobacteria
Ensifer sp. LC13 [MBSP]
71453
71529
+
Pro
CGG
[ENA]
¡û
>W1611066874
MBSQ01000061
Alphaproteobacteria
Ensifer sp. LC14 [MBSQ]
10030
9954
-
Pro
CGG
[ENA]
¡û
>W1611067051
MBSU01000022
Alphaproteobacteria
Ensifer sp. LC499 [MBSU]
10282
10206
-
Pro
CGG
[ENA]
¡û
>W1710021039
AUSY01000024
Alphaproteobacteria
Sinorhizobium sp. GW3 [AUSY]
78519
78595
+
Pro
CGG
[ENA]
¡û
>W1710021083
AUSZ01000001
Alphaproteobacteria
Sinorhizobium sp. GL28 [AUSZ]
381309
381233
-
Pro
CGG
[ENA]
¡û
>W1710021129
AUTA01000001
Alphaproteobacteria
Sinorhizobium sp. Sb3 [AUTA]
325869
325945
+
Pro
CGG
[ENA]
¡û
>W1710021216
AUTB01000084
Alphaproteobacteria
Sinorhizobium sp. GL2 [AUTB]
327736
327812
+
Pro
CGG
[ENA]
¡û
>W1710021264
AUTC01000189
Alphaproteobacteria
Sinorhizobium fredii USDA 205 [AUTC]
218764
218688
-
Pro
CGG
[ENA]
¡û
>W1710509426
FMXF01000001
Alphaproteobacteria
Sinorhizobium sp. NFACC03 [FMXF]
586742
586818
+
Pro
CGG
[ENA]
¡û
>W1710521780
FNGR01000002
Alphaproteobacteria
Ensifer sp. YR511 [FNGR]
465628
465552
-
Pro
CGG
[ENA]
¡û
>W1710556799
FOKM01000003
Alphaproteobacteria
Rhizobium sp. NFR07 [FOKM]
189206
189130
-
Pro
CGG
[ENA]
¡û
>W1710561944
FOON01000001
Alphaproteobacteria
Ensifer sp. OV372 [FOON]
675670
675746
+
Pro
CGG
[ENA]
¡û
>W1710698074
LAZS01000006
Alphaproteobacteria
Ensifer adhaerens [LAZS]
136725
136649
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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