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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178334 (84 seq.)
>WENV180697877
ODDE01008225
[ODDE] human metagenome; G_DNA_Supragingival plaque
99
25
-
Thr
TGT
[ENA]
¡û
>WENV180720091
ODGJ01016095
[ODGJ] human metagenome; G_DNA_Tongue dorsum
1964
2038
+
Thr
TGT
[ENA]
¡û
>WENV180727783
ODGU01012252
[ODGU] human metagenome; G_DNA_Supragingival plaque
1
75
+
Thr
TGT
[ENA]
¡û
>WENV180734180
ODGZ01003472
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1779
1705
-
Thr
TGT
[ENA]
¡û
>WENV180736485
ODHB01092719
[ODHB] human metagenome; G_DNA_Supragingival plaque
177
251
+
Thr
TGT
[ENA]
¡û
>WENV180738393
ODHD01000013
[ODHD] human metagenome; G_DNA_Supragingival plaque
108451
108377
-
Thr
TGT
[ENA]
¡û
>WENV180750850
ODHS01010169
[ODHS] human metagenome; G_DNA_Supragingival plaque
2809
2883
+
Thr
TGT
[ENA]
¡û
>WENV180777993
ODIM01000215
[ODIM] human metagenome; G_DNA_Supragingival plaque
10328
10402
+
Thr
TGT
[ENA]
¡û
>WENV180779322
ODIN01002464
[ODIN] human metagenome; G_DNA_Throat
5229
5155
-
Thr
TGT
[ENA]
¡û
>WENV180788537
ODIS01074158
[ODIS] human metagenome; G_DNA_Supragingival plaque
128
54
-
Thr
TGT
[ENA]
¡û
>WENV180795570
ODJB01000042
[ODJB] human metagenome; G_DNA_Supragingival plaque
17332
17258
-
Thr
TGT
[ENA]
¡û
>WENV180801460
ODJD01034680
[ODJD] human metagenome; G_DNA_Supragingival plaque
677
751
+
Thr
TGT
[ENA]
¡û
>WENV180804234
ODJG01001218
[ODJG] human metagenome; G_DNA_Supragingival plaque
101
27
-
Thr
TGT
[ENA]
¡û
>WENV180809697
ODJK01037415
[ODJK] human metagenome; G_DNA_Subgingival plaque
823
897
+
Thr
TGT
[ENA]
¡û
>WENV180813278
ODJO01000273
[ODJO] human metagenome; G_DNA_Supragingival plaque
16466
16540
+
Thr
TGT
[ENA]
¡û
>WENV180824373
ODJX01004524
[ODJX] human metagenome; G_DNA_Supragingival plaque
862
788
-
Thr
TGT
[ENA]
¡û
>WENV180831777
ODKC01000083
[ODKC] human metagenome; G_DNA_Supragingival plaque
92218
92292
+
Thr
TGT
[ENA]
¡û
>WENV180834902
ODKE01000122
[ODKE] human metagenome; G_DNA_Supragingival plaque
31333
31407
+
Thr
TGT
[ENA]
¡û
>WENV180842905
ODKN01000092
[ODKN] human metagenome; G_DNA_Supragingival plaque
21562
21488
-
Thr
TGT
[ENA]
¡û
>WENV180847238
ODKT01054540
[ODKT] human metagenome; G_DNA_Supragingival plaque
118
44
-
Thr
TGT
[ENA]
¡û
>WENV180852921
ODKW01012025
[ODKW] human metagenome; G_DNA_Tongue dorsum
1933
2007
+
Thr
TGT
[ENA]
¡û
>WENV180860511
ODLD01123664
[ODLD] human metagenome; G_DNA_Supragingival plaque
169
243
+
Thr
TGT
[ENA]
¡û
>WENV180888719
ODMN01002956
[ODMN] human metagenome; G_DNA_Supragingival plaque
96
22
-
Thr
TGT
[ENA]
¡û
>WENV180921799
ODTJ01000444
[ODTJ] human metagenome; G_DNA_Supragingival plaque
17699
17625
-
Thr
TGT
[ENA]
¡û
>WENV180924823
ODTK01018736
[ODTK] human metagenome; G_DNA_Supragingival plaque
1359
1285
-
Thr
TGT
[ENA]
¡û
>WENV180927902
ODTM01006569
[ODTM] human metagenome; G_DNA_Supragingival plaque
1213
1139
-
Thr
TGT
[ENA]
¡û
>WENV180931049
ODTP01001236
[ODTP] human metagenome; G_DNA_Tongue dorsum
17247
17321
+
Thr
TGT
[ENA]
¡û
>WENV180938905
ODTX01009688
[ODTX] human metagenome; G_DNA_Supragingival plaque
3486
3560
+
Thr
TGT
[ENA]
¡û
>WENV180945319
ODUC01113264
[ODUC] human metagenome; G_DNA_Supragingival plaque
301
375
+
Thr
TGT
[ENA]
¡û
>WENV180947915
ODUG01000102
[ODUG] human metagenome; G_DNA_Tongue dorsum
64923
64997
+
Thr
TGT
[ENA]
¡û
>WENV180950655
ODUH01000575
[ODUH] human metagenome; G_DNA_Subgingival plaque
107
33
-
Thr
TGT
[ENA]
¡û
>WENV180973567
ODUW01008310
[ODUW] human metagenome; G_DNA_Supragingival plaque
1554
1480
-
Thr
TGT
[ENA]
¡û
>WENV180978399
ODUZ01075455
[ODUZ] human metagenome; G_DNA_Tongue dorsum
225
299
+
Thr
TGT
[ENA]
¡û
>WENV180982046
ODVE01130464
[ODVE] human metagenome; G_DNA_Supragingival plaque
263
337
+
Thr
TGT
[ENA]
¡û
>WENV180982785
ODVF01000721
[ODVF] human metagenome; G_DNA_Supragingival plaque
16512
16586
+
Thr
TGT
[ENA]
¡û
>WENV180986223
ODVJ01064654
[ODVJ] human metagenome; G_DNA_Tongue dorsum
111
37
-
Thr
TGT
[ENA]
¡û
>WENV180990732
ODVN01004087
[ODVN] human metagenome; G_DNA_Tongue dorsum
107
33
-
Thr
TGT
[ENA]
¡û
>WENV180999729
ODVT01055534
[ODVT] human metagenome; G_DNA_Buccal mucosa
119
45
-
Thr
TGT
[ENA]
¡û
>WENV181002563
ODVX01000662
[ODVX] human metagenome; G_DNA_Supragingival plaque
5071
5145
+
Thr
TGT
[ENA]
¡û
>WENV181009282
ODWE01047903
[ODWE] human metagenome; G_DNA_Supragingival plaque
740
814
+
Thr
TGT
[ENA]
¡û
>WENV181019964
ODWU01028660
[ODWU] human metagenome; G_DNA_Supragingival plaque
792
718
-
Thr
TGT
[ENA]
¡û
>WENV181042669
ODXU01002940
[ODXU] human metagenome; G_DNA_Buccal mucosa
3078
3152
+
Thr
TGT
[ENA]
¡û
>WENV181043458
ODXV01000024
[ODXV] human metagenome; G_DNA_Tongue dorsum
76027
76101
+
Thr
TGT
[ENA]
¡û
>WENV181050449
ODYD01019479
[ODYD] human metagenome; G_DNA_Supragingival plaque
100
26
-
Thr
TGT
[ENA]
¡û
>WENV181059446
ODYM01001104
[ODYM] human metagenome; G_DNA_Tongue dorsum
101
27
-
Thr
TGT
[ENA]
¡û
>WENV181064279
ODYP01017257
[ODYP] human metagenome; G_DNA_Supragingival plaque
1097
1171
+
Thr
TGT
[ENA]
¡û
>WENV181067413
ODZI01017152
[ODZI] human metagenome; G_DNA_Supragingival plaque
1454
1380
-
Thr
TGT
[ENA]
¡û
>WENV181069879
OEAE01000027
[OEAE] human metagenome; G_DNA_Supragingival plaque
108909
108835
-
Thr
TGT
[ENA]
¡û
>WENV181076782
OEAP01013526
[OEAP] human metagenome; G_DNA_Supragingival plaque
1338
1264
-
Thr
TGT
[ENA]
¡û
>WENV181083985
OEAV01043481
[OEAV] human metagenome; G_DNA_Supragingival plaque
776
850
+
Thr
TGT
[ENA]
¡û
>WENV181087586
OEAY01073206
[OEAY] human metagenome; G_DNA_Tongue dorsum
258
332
+
Thr
TGT
[ENA]
¡û
>WENV181091642
OEBC01064630
[OEBC] human metagenome; G_DNA_Supragingival plaque
114
40
-
Thr
TGT
[ENA]
¡û
>WENV181106715
OEEI01000051
[OEEI] human metagenome; G_DNA_Supragingival plaque
21082
21008
-
Thr
TGT
[ENA]
¡û
>WENV181120353
OEFJ01040030
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
113
39
-
Thr
TGT
[ENA]
¡û
>WENV181121651
OEFL01012137
[OEFL] human metagenome; G_DNA_Supragingival plaque
92
18
-
Thr
TGT
[ENA]
¡û
>WENV181123890
OEFQ01002101
[OEFQ] human metagenome; G_DNA_Supragingival plaque
1771
1697
-
Thr
TGT
[ENA]
¡û
>WENV181136318
OEGI01003196
[OEGI] human metagenome; G_DNA_Supragingival plaque
2027
2101
+
Thr
TGT
[ENA]
¡û
>WENV181137778
OEGJ01024121
[OEGJ] human metagenome; G_DNA_Supragingival plaque
424
498
+
Thr
TGT
[ENA]
¡û
>WENV181140785
OEGT01000138
[OEGT] human metagenome; G_DNA_Throat
31494
31568
+
Thr
TGT
[ENA]
¡û
>WENV181146449
OEHQ01006059
[OEHQ] human metagenome; G_DNA_Supragingival plaque
3549
3623
+
Thr
TGT
[ENA]
¡û
>WENV181151451
OEHW01053965
[OEHW] human metagenome; G_DNA_Tongue dorsum
615
689
+
Thr
TGT
[ENA]
¡û
>WENV181152047
OEIA01000043
[OEIA] human metagenome; G_DNA_Supragingival plaque
65648
65722
+
Thr
TGT
[ENA]
¡û
>WENV181156375
OEIE01011921
[OEIE] human metagenome; G_DNA_Supragingival plaque
478
552
+
Thr
TGT
[ENA]
¡û
>WENV181179407
OEJT01004476
[OEJT] human metagenome; G_DNA_Supragingival plaque
112
38
-
Thr
TGT
[ENA]
¡û
>WENV181181263
OEJU01015133
[OEJU] human metagenome; G_DNA_Supragingival plaque
1047
1121
+
Thr
TGT
[ENA]
¡û
>WENV181182533
OEJV01015102
[OEJV] human metagenome; G_DNA_Supragingival plaque
626
700
+
Thr
TGT
[ENA]
¡û
>WENV181242260
OFFG01000026
[OFFG] mouse gut metagenome; faeces
48272
48198
-
Thr
TGT
[ENA]
¡û
>WENV181246579
OFFK01000152
[OFFK] mouse gut metagenome; faeces
47619
47693
+
Thr
TGT
[ENA]
¡û
>WENV181251673
OFFP01000021
[OFFP] mouse gut metagenome; faeces
20697
20623
-
Thr
TGT
[ENA]
¡û
>WENV181252722
OFFQ01000019
[OFFQ] mouse gut metagenome; faeces
48272
48198
-
Thr
TGT
[ENA]
¡û
>WENV181262974
OFFZ01000010
[OFFZ] mouse gut metagenome; faeces
48440
48366
-
Thr
TGT
[ENA]
¡û
>WENV181281506
OFGP01000058
[OFGP] mouse gut metagenome; faeces
21889
21815
-
Thr
TGT
[ENA]
¡û
>WENV181289402
OFHA01000053
[OFHA] mouse gut metagenome; faeces
47476
47550
+
Thr
TGT
[ENA]
¡û
>WENV181290883
OFHB01000459
[OFHB] mouse gut metagenome; faeces
18816
18742
-
Thr
TGT
[ENA]
¡û
>WENV182639985
OJLB01000009
[OJLB] metagenome; surface
125790
125864
+
Thr
TGT
[ENA]
¡û
>C181063750
CP022384
Bacteroidota
Capnocytophaga leadbetteri H6253 [CP022384]
1957916
1957990
+
Thr
TGT
-
¡û
>W1810503606
QBKG01000016
Bacteroidota
Capnocytophaga leadbetteri DSM 22902 [QBKG]
23307
23381
+
Thr
TGT
[ENA]
¡û
>C211120319
CP059208
Bacteroidota
Blattabacterium cuenoti ECTOBIsp [CP059208]
467582
467509
-
Thr
TGT
-
¡û
>C211120416
CP059216
Bacteroidota
Blattabacterium cuenoti BALTAsp [CP059216]
439520
439447
-
Thr
TGT
-
¡û
>C211120447
CP059221
Bacteroidota
Blattabacterium cuenoti ALLACbim [CP059221]
427628
427555
-
Thr
TGT
-
¡û
>C211120510
CP059224
Bacteroidota
Blattabacterium cuenoti PROTAGlug [CP059224]
480777
480702
-
Thr
TGT
-
¡û
>C241107650
CP046316
Bacteroidota
Capnocytophaga sp. FDAARGOS_737 [CP046316]
616948
617022
+
Thr
TGT
-
¡û
>C10101604
CP001429
Bacteroidota
Blattabacterium sp. [Periplaneta americana] str. BPLAN [CP001429]
479023
478948
-
Thr
TGT
[Ensembl]
¡û
>C131004600
CP003605
Bacteroidota
Blattabacterium sp. [Blatta orientalis] str. Tarazona [CP003605]
179417
179492
+
Thr
TGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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