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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178339 (11 seq.)
>A171006768
CP017006
Thermoproteota
Sulfolobus sp. A20 [CP017006]
596773
596848
+
Arg
GCG
-
¡û
>W2011248974
QFVW01000002
Thermoproteota
Sulfolobus sp. A20-N-F8 [QFVW]
61010
60935
-
Arg
GCG
[ENA]
¡û
>W2011249058
QFVX01000039
Thermoproteota
Sulfolobus sp. A20-N-F6 [QFVX]
4962
5037
+
Arg
GCG
[ENA]
¡û
>W2011249109
QFVZ01000043
Thermoproteota
Sulfolobus sp. B5 [QFVZ]
9429
9504
+
Arg
GCG
[ENA]
¡û
>W2011249123
QFWA01000061
Thermoproteota
Sulfolobus sp. E5 [QFWA]
4167
4092
-
Arg
GCG
[ENA]
¡û
>W2011249142
QFWB01000045
Thermoproteota
Sulfolobus sp. C3 [QFWB]
9086
9011
-
Arg
GCG
[ENA]
¡û
>W2011249154
QFWC01000015
Thermoproteota
Sulfolobus sp. F3 [QFWC]
8101
8176
+
Arg
GCG
[ENA]
¡û
>W2011249168
QFWD01000021
Thermoproteota
Sulfolobus sp. E3 [QFWD]
10466
10541
+
Arg
GCG
[ENA]
¡û
>W2011249176
QFWE01000006
Thermoproteota
Sulfolobus sp. F1 [QFWE]
32732
32807
+
Arg
GCG
[ENA]
¡û
>W2011249216
QFWF01000065
Thermoproteota
Sulfolobus sp. E1 [QFWF]
419
494
+
Arg
GCG
[ENA]
¡û
>W2011257969
QIMI01000027
Thermoproteota
Sulfolobus sp. B1 [QIMI]
5492
5567
+
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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