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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178388 (16 seq.)
>WENV180043586
LQAI01001444
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
1969
2045
+
Arg
CCG
[ENA]
¡û
>WENV180043977
LQAJ01000147
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
2328
2402
+
Arg
CCG
[ENA]
¡û
>WENV183747786
PPCM01038630
[PPCM] marine sediment metagenome; marine sediment
175
251
+
Arg
CCG
[ENA]
¡û
>WENV170417990
CEUM01015728
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
17671
17595
-
Arg
CCG
[ENA]
¡û
>WENV170438412
CEUU01114663
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6802
6726
-
Arg
CCG
[ENA]
¡û
>WENV170441167
CEUV01150041
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3518
3442
-
Arg
CCG
[ENA]
¡û
>WENV170470430
CEVF01271227
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
620
544
-
Arg
CCG
[ENA]
¡û
>WENV170903509
MDTD01203093
[MDTD] marine metagenome; seawater
102580
102504
-
Arg
CCG
[ENA]
¡û
>C181227010
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
1227958
1227882
-
Arg
CCG
-
¡û
>W2012442029
WUEH01000009
Thermodesulfobacteriota
Pseudodesulfovibrio sp. JC047 [WUEH]
117477
117553
+
Arg
CCG
[ENA]
¡û
>W10111354
ADDI01000001
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
310981
311057
+
Arg
CCG
[ENA]
¡û
>C231631041
CP120635
Thermodesulfobacteriota
Pseudodesulfovibrio sp. MCM B-1480 [CP120635]
2443052
2442976
-
Arg
CCG
-
¡û
>C241108985
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
2448408
2448484
+
Arg
CCG
-
¡û
>C241149589
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
71805
71729
-
Arg
CCG
-
¡û
>C11106846
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
1410181
1410257
+
Arg
CCG
[Ensembl]
¡û
>W11114297
ADDI01000001
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
310981
311057
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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