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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178397 (104 seq.)
>W1710784449
LJGY01000020
Actinomycetota
Streptomyces nanshensis [LJGY]
73193
73117
-
Pro
GGG
[ENA]
¡û
>W1710857029
LLZU01000033
Actinomycetota
Wenjunlia vitaminophila vitaminophilus [LLZU]
20806
20882
+
Pro
GGG
[ENA]
¡û
>W1710889833
LNBE01000003
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
751144
751218
+
Pro
GGG
[ENA]
¡û
>W1710889872
LNBE01000004
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
1389722
1389646
-
Pro
GGG
[ENA]
¡û
>W1711183514
LWLB01000036
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
253466
253392
-
Pro
GGG
[ENA]
¡û
>W1711282519
LZNS01000001
Actinomycetota
Streptomyces sp. MP131-18 [LZNS]
121971
122045
+
Pro
GGG
[ENA]
¡û
>W1711346019
MCOK01000001
Actinomycetota
Nocardiopsis sinuspersici [MCOK]
1162958
1163032
+
Pro
GGG
[ENA]
¡û
>W1711346020
MCOK01000001
Actinomycetota
Nocardiopsis sinuspersici [MCOK]
1256180
1256254
+
Pro
GGG
[ENA]
¡û
>W1711589942
MOEP01000244
Actinomycetota
Streptomyces cinnamoneus [MOEP]
2223
2149
-
Pro
GGG
[ENA]
¡û
>W1711743850
MUFU01000031
Actinomycetota
Streptomyces alboverticillatus [MUFU]
10003
9927
-
Pro
GGG
[ENA]
¡û
>W1711748986
MUME01000065
Actinomycetota
Streptomyces thermovulgaris [MUME]
28692
28766
+
Pro
GGG
[ENA]
¡û
>W1711749027
MUME01000325
Actinomycetota
Streptomyces thermovulgaris [MUME]
11555
11481
-
Pro
GGG
[ENA]
¡û
>C171122533
CP021744
Actinomycetota
Streptomyces albireticuli MDJK11 [CP021744]
6202344
6202268
-
Pro
GGG
-
¡û
>C171122567
CP021744
Actinomycetota
Streptomyces albireticuli MDJK11 [CP021744]
1230190
1230116
-
Pro
GGG
-
¡û
>W131053588
ANAE01000127
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
8974
9050
+
Pro
GGG
[ENA]
¡û
>W131053589
ANAE01000127
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
24787
24861
+
Pro
GGG
[ENA]
¡û
>W131054604
ANAW01000172
Actinomycetota
Nocardiopsis synnemataformans DSM 44143 [ANAW]
46906
46980
+
Pro
GGG
[ENA]
¡û
>W131054605
ANAW01000189
Actinomycetota
Nocardiopsis synnemataformans DSM 44143 [ANAW]
7419
7345
-
Pro
GGG
[ENA]
¡û
>W131054652
ANAX01000260
Actinomycetota
Nocardiopsis halotolerans DSM 44410 [ANAX]
22675
22749
+
Pro
GGG
[ENA]
¡û
>W131054754
ANAZ01000005
Actinomycetota
Nocardiopsis valliformis DSM 45023 [ANAZ]
19326
19400
+
Pro
GGG
[ENA]
¡û
>W131054755
ANAZ01000005
Actinomycetota
Nocardiopsis valliformis DSM 45023 [ANAZ]
62586
62660
+
Pro
GGG
[ENA]
¡û
>W131054798
ANBA01000009
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
436611
436537
-
Pro
GGG
[ENA]
¡û
>W131054799
ANBA01000009
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
342569
342495
-
Pro
GGG
[ENA]
¡û
>W131055021
ANBE01000007
Actinomycetota
Nocardiopsis xinjiangensis YIM 90004 [ANBE]
107795
107721
-
Pro
GGG
[ENA]
¡û
>W131055022
ANBE01000007
Actinomycetota
Nocardiopsis xinjiangensis YIM 90004 [ANBE]
77230
77156
-
Pro
GGG
[ENA]
¡û
>W131055128
ANBG01000027
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
10934
10860
-
Pro
GGG
[ENA]
¡û
>W131098662
AORZ01000014
Actinomycetota
Streptomyces mobaraensis NBRC 13819 = DSM 40847 [AORZ]
63662
63586
-
Pro
GGG
[ENA]
¡û
>W131098707
AORZ01000121
Actinomycetota
Streptomyces mobaraensis NBRC 13819 = DSM 40847 [AORZ]
5194
5268
+
Pro
GGG
[ENA]
¡û
>W131098823
AOSG01000030
Actinomycetota
Thermobifida fusca TM51 [AOSG]
10938
10864
-
Pro
GGG
[ENA]
¡û
>W131166384
ARCK01000038
Actinomycetota
Wenjunlia vitaminophila DSM 41686 [ARCK]
23532
23608
+
Pro
GGG
[ENA]
¡û
>W131173438
ARHR01000069
Actinomycetota
Streptomycetaceae bacterium CNQ766 CNQ766 [ARHR]
56070
55996
-
Pro
GGG
[ENA]
¡û
>W131204715
ATCE01000044
Actinomycetota
Streptomyces sp. HPH0547 [ATCE]
95872
95796
-
Pro
GGG
[ENA]
¡û
>C000344
CP000481
Actinomycetota
Acidothermus cellulolyticus 11B 11B; ATCC 43068 [CP000481]
1372838
1372762
-
Pro
GGG
[Ensembl]
¡û
>C025625
CP000088
Actinomycetota
Thermobifida fusca YX [CP000088]
1443115
1443042
-
Pro
GGG
[Ensembl]
¡û
>WENV180261234
OBEQ011273762
[OBEQ] groundwater metagenome; groundwater
6954
7028
+
Pro
GGG
[ENA]
¢þ
>w001926
AAAQ02000012
Actinomycetota
Thermobifida fusca [AAAQ]
32468
32544
+
Pro
GGG
[ENA]
¡û
>W141142610
AWQV01000511
Actinomycetota
Streptomycetaceae bacterium MP113-05 [AWQV]
835
911
+
Pro
GGG
[ENA]
¡û
>WENV181609367
OGLN01021958
[OGLN] metagenome; Human gut stool
1360
1286
-
Pro
GGG
[ENA]
¢þ
>W141185604
AYJW01000076
Actinomycetota
Saccharopolyspora rectivirgula DSM 43747 [AYJW]
10378
10452
+
Pro
GGG
[ENA]
¡û
>WENV183748553
PPFU01052019
[PPFU] hypolithon metagenome; Antarctic Hypolithon
83
9
-
Pro
GGG
[ENA]
¢þ
>C181072207
CP022753
Actinomycetota
Nocardiopsis gilva YIM 90087 [CP022753]
2795051
2795125
+
Pro
GGG
-
¡û
>C181200652
CP031455
Actinomycetota
Streptomyces olivoreticuli subsp. olivoreticuli ATCC 31159 [CP031455]
7767243
7767319
+
Pro
GGG
-
¡û
>C191127813
CP034587
Actinomycetota
Streptomyces luteoverticillatus CGMCC 15060 [CP034587]
6003892
6003966
+
Pro
GGG
-
¡û
>W09105023
AAOL01000005
Actinomycetota
Acidothermus cellulolyticus 11B [AAOL]
134517
134441
-
Pro
GGG
[ENA]
¡û
>W141754550
JNVU01000009
Actinomycetota
Saccharopolyspora rectivirgula [JNVU]
124665
124591
-
Pro
GGG
[ENA]
¡û
>W141758061
JNYJ01000011
Actinomycetota
Dactylosporangium aurantiacum [JNYJ]
48454
48528
+
Pro
GGG
[ENA]
¡û
>W141760204
JNZX01000052
Actinomycetota
Dactylosporangium aurantiacum [JNZX]
4996
5070
+
Pro
GGG
[ENA]
¡û
>W141765620
JODL01000023
Actinomycetota
Streptomyces megasporus [JODL]
23973
23899
-
Pro
GGG
[ENA]
¡û
>W141767123
JOEK01000020
Actinomycetota
Streptomyces avicenniae [JOEK]
84520
84446
-
Pro
GGG
[ENA]
¡û
>W141768799
JOFL01000005
Actinomycetota
Streptomyces roseoverticillatus [JOFL]
4448
4372
-
Pro
GGG
[ENA]
¡û
>W141770359
JOGK01000041
Actinomycetota
Streptomyces sp. NRRL F-5639 [JOGK]
30020
30096
+
Pro
GGG
[ENA]
¡û
>W1910285451
FRFF01000043
Actinomycetota
Nocardiopsis sp. JB363 [FRFF]
6771
6697
-
Pro
GGG
[ENA]
¡û
>W1910285456
FRFF01000067
Actinomycetota
Nocardiopsis sp. JB363 [FRFF]
16464
16390
-
Pro
GGG
[ENA]
¡û
>W1910613669
LGUI01000013
Actinomycetota
Streptomyces eurocidicus ATCC 27428 [LGUI]
247478
247554
+
Pro
GGG
[ENA]
¡û
>W1910916412
NHZO01000037
Actinomycetota
Streptomyces cinnamoneus ATCC 21532 [NHZO]
275275
275349
+
Pro
GGG
[ENA]
¡û
>W1910916477
NHZO01000168
Actinomycetota
Streptomyces cinnamoneus ATCC 21532 [NHZO]
735251
735325
+
Pro
GGG
[ENA]
¡û
>W1911245218
NSJV01000348
Actinomycetota
Streptomyces albireticuli NRRL B-1670 [NSJV]
37875
37799
-
Pro
GGG
[ENA]
¡û
>W1911539586
ONLN01000119
Actinomycetota
Thermobifida fusca [ONLN]
13122
13196
+
Pro
GGG
[ENA]
¡û
>W1911580775
PENC01000015
Actinomycetota
Streptomyces griseocarneus 132 [PENC]
147225
147299
+
Pro
GGG
[ENA]
¡û
>W1911702588
QODG01000005
Actinomycetota
Streptomyces sp. YIM 130001 [QODG]
385577
385503
-
Pro
GGG
[ENA]
¡û
>W1810089704
PGEW01000002
Actinomycetota
Streptomyces sp. CNZ306 [PGEW]
1603937
1604011
+
Pro
GGG
[ENA]
¡û
>W1810115640
PHNC01000007
Actinomycetota
Streptomyces orinoci NRRL B-3379 [PHNC]
221373
221447
+
Pro
GGG
[ENA]
¡û
>W1810185242
PKFQ01000001
Actinomycetota
Streptomyces cinnamoneus DSM 41675 [PKFQ]
1384593
1384667
+
Pro
GGG
[ENA]
¡û
>W1810387779
PXWG01000023
Actinomycetota
Streptosporangium nondiastaticum TBG75A20 [PXWG]
16960
17036
+
Pro
GGG
[ENA]
¡û
>W1810608298
QGTF01000004
Actinomycetota
Nocardiopsis sp. L17-MgMaSL7 [QGTF]
132470
132544
+
Pro
GGG
[ENA]
¡û
>W1810608299
QGTF01000004
Actinomycetota
Nocardiopsis sp. L17-MgMaSL7 [QGTF]
149578
149652
+
Pro
GGG
[ENA]
¡û
>W1810870206
QUAK01000234
Actinomycetota
Streptomyces triticagri NEAU-YY421 [QUAK]
61805
61881
+
Pro
GGG
[ENA]
¡û
>W1510013222
BBOM01000014
Actinomycetota
Streptomyces sp. NBRC 109706 [BBOM]
157460
157534
+
Pro
GGG
[ENA]
¡û
>W1511555676
JZWZ01000108
Actinomycetota
Streptomyces sp. NRRL B-1568 [JZWZ]
4023
3949
-
Pro
GGG
[ENA]
¡û
>W1511568530
LAJC01000054
Actinomycetota
Allosalinactinospora lopnorensis CA15-2 [LAJC]
31322
31396
+
Pro
GGG
[ENA]
¡û
>W1511573661
LAND01000001
Actinomycetota
Streptomyces sp. WMMB 714 [LAND]
540115
540189
+
Pro
GGG
[ENA]
¡û
>W1511584462
LAVK01000429
Actinomycetota
Streptomyces sp. SBT349 [LAVK]
217
291
+
Pro
GGG
[ENA]
¡û
>W1511584538
LAVM01000009
Actinomycetota
Nocardiopsis sp. SBT366 [LAVM]
57923
57847
-
Pro
GGG
[ENA]
¡û
>W1511584539
LAVM01000009
Actinomycetota
Nocardiopsis sp. SBT366 [LAVM]
40622
40546
-
Pro
GGG
[ENA]
¡û
>W1511689641
LFXA01000002
Actinomycetota
Streptomyces caatingaensis CMAA 1322 [LFXA]
631736
631812
+
Pro
GGG
[ENA]
¡û
>W1511689680
LFXA01000017
Actinomycetota
Streptomyces caatingaensis CMAA 1322 [LFXA]
285871
285797
-
Pro
GGG
[ENA]
¡û
>W1511697714
LGEC01000092
Actinomycetota
Nocardiopsis sp. NRRL B-16309 [LGEC]
43420
43494
+
Pro
GGG
[ENA]
¡û
>W1511697715
LGEC01000092
Actinomycetota
Nocardiopsis sp. NRRL B-16309 [LGEC]
46094
46168
+
Pro
GGG
[ENA]
¡û
>W1610051313
BBGT01000008
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BBGT]
13591
13665
+
Pro
GGG
[ENA]
¡û
>W1610067664
BCQS01000026
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
80592
80518
-
Pro
GGG
[ENA]
¡û
>W1610068909
BCRR01000045
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
4257
4183
-
Pro
GGG
[ENA]
¡û
>W1610069208
BCSH01000031
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
3875
3949
+
Pro
GGG
[ENA]
¡û
>W1610069239
BCSH01000106
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
8649
8575
-
Pro
GGG
[ENA]
¡û
>W1610073702
BCWB01000009
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BCWB]
14675
14749
+
Pro
GGG
[ENA]
¡û
>W1610081537
BDDR01000014
Actinomycetota
Streptomyces sp. F-3 [BDDR]
24661
24735
+
Pro
GGG
[ENA]
¡û
>W1610081539
BDDR01000014
Actinomycetota
Streptomyces sp. F-3 [BDDR]
73161
73235
+
Pro
GGG
[ENA]
¡û
>W1610633286
LIQP01000333
Actinomycetota
Streptomyces albus gibsonii [LIQP]
103
179
+
Pro
GGG
[ENA]
¡û
>W1610719410
LLZU01000033
Actinomycetota
Wenjunlia vitaminophila vitaminophilus [LLZU]
20806
20882
+
Pro
GGG
[ENA]
¡û
>W1610750250
LNBE01000004
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
1389722
1389646
-
Pro
GGG
[ENA]
¡û
>W1710047712
BBGT01000008
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BBGT]
13591
13665
+
Pro
GGG
[ENA]
¡û
>W1710065037
BCQS01000026
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
80592
80518
-
Pro
GGG
[ENA]
¡û
>W1710066282
BCRR01000045
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
4257
4183
-
Pro
GGG
[ENA]
¡û
>W1710066581
BCSH01000031
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
3875
3949
+
Pro
GGG
[ENA]
¡û
>W1710066612
BCSH01000106
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
8649
8575
-
Pro
GGG
[ENA]
¡û
>W1710070820
BCWB01000009
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BCWB]
14675
14749
+
Pro
GGG
[ENA]
¡û
>W1710080252
BDDR01000014
Actinomycetota
Streptomyces sp. F-3 [BDDR]
24661
24735
+
Pro
GGG
[ENA]
¡û
>W1710080254
BDDR01000014
Actinomycetota
Streptomyces sp. F-3 [BDDR]
73161
73235
+
Pro
GGG
[ENA]
¡û
>W1710503719
FMHI01000022
Actinomycetota
Streptomyces sp. WMMB 322 [FMHI]
23899
23825
-
Pro
GGG
[ENA]
¡û
>W1710503724
FMHJ01000001
Actinomycetota
Streptomyces sp. WMMB 714 [FMHJ]
540115
540189
+
Pro
GGG
[ENA]
¡û
>W1710576290
FOZX01000007
Actinomycetota
Saccharopolyspora flava [FOZX]
138579
138653
+
Pro
GGG
[ENA]
¡û
>W1710588490
FQZK01000004
Actinomycetota
Nocardiopsis flavescens [FQZK]
303817
303743
-
Pro
GGG
[ENA]
¡û
>W1710588491
FQZK01000004
Actinomycetota
Nocardiopsis flavescens [FQZK]
291768
291694
-
Pro
GGG
[ENA]
¡û
>W1710619331
JHEJ01000067
Actinomycetota
Streptomyces nanshensis [JHEJ]
3007411
3007487
+
Pro
GGG
[ENA]
¡û
>W1710767718
LIQP01000333
Actinomycetota
Streptomyces albus gibsonii [LIQP]
103
179
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK