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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178517 (72 seq.)
>W1710923726
LOBU02000015
Actinomycetota
Amycolatopsis regifaucium [LOBU]
642267
642193
-
Arg
ACG
[ENA]
¡û
>W1710997839
LQCI01000034
Actinomycetota
Amycolatopsis regifaucium [LQCI]
513689
513763
+
Arg
ACG
[ENA]
¡û
>W1711004808
LQMT02000022
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
200012
200086
+
Arg
ACG
[ENA]
¡û
>W1711190848
LWSF01000009
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
100270
100344
+
Arg
ACG
[ENA]
¡û
>W1711662677
MQUP01000004
Actinomycetota
Amycolatopsis keratiniphila subsp. nogabecina [MQUP]
141637
141563
-
Arg
ACG
[ENA]
¡û
>W1711662742
MQUQ01000015
Actinomycetota
Amycolatopsis coloradensis [MQUQ]
393246
393320
+
Arg
ACG
[ENA]
¡û
>W1711749216
MUMI01000147
Actinomycetota
Amycolatopsis kentuckyensis [MUMI]
4403
4477
+
Arg
ACG
[ENA]
¡û
>W1711749286
MUMJ01000490
Actinomycetota
Amycolatopsis lexingtonensis [MUMJ]
1342
1268
-
Arg
ACG
[ENA]
¡û
>W1711749323
MUMK01000110
Actinomycetota
Amycolatopsis pretoriensis [MUMK]
8325
8251
-
Arg
ACG
[ENA]
¡û
>W1711765412
MUXN01000005
Actinomycetota
Amycolatopsis azurea DSM 43854 [MUXN]
177427
177353
-
Arg
ACG
[ENA]
¡û
>C171046307
CP016174
Actinomycetota
Amycolatopsis orientalis B-37 [CP016174]
9171121
9171047
-
Arg
ACG
-
¡û
>W131064595
ANMG01000001
Actinomycetota
Amycolatopsis azurea DSM 43854 [ANMG]
159546
159620
+
Arg
ACG
[ENA]
¡û
>W131091936
AOHO01000048
Actinomycetota
Amycolatopsis decaplanina DSM 44594 [AOHO]
295549
295623
+
Arg
ACG
[ENA]
¡û
>W131100460
AOUO01000178
Actinomycetota
Amycolatopsis vancoresmycina DSM 44592 [AOUO]
25976
25902
-
Arg
ACG
[ENA]
¡û
>W131164046
ARAF01000002
Actinomycetota
Amycolatopsis alba DSM 44262 [ARAF]
1903517
1903591
+
Arg
ACG
[ENA]
¡û
>W131165082
ARBH01000007
Actinomycetota
Amycolatopsis balhimycina FH 1894 [ARBH]
284895
284969
+
Arg
ACG
[ENA]
¡û
>W131181790
ARPK01000004
Actinomycetota
Amycolatopsis benzoatilytica AK 16/65 [ARPK]
2281623
2281549
-
Arg
ACG
[ENA]
¡û
>W131191618
ASJB01000080
Actinomycetota
Amycolatopsis orientalis DSM 40040 = KCTC 9412 [ASJB]
36700
36626
-
Arg
ACG
[ENA]
¡û
>W131202816
ASXG01000172
Actinomycetota
Amycolatopsis orientalis DSM 43388 [ASXG]
110761
110687
-
Arg
ACG
[ENA]
¡û
>W131202868
ASXH01000157
Actinomycetota
Amycolatopsis orientalis DSM 46075 [ASXH]
140600
140526
-
Arg
ACG
[ENA]
¡û
>WENV170561503
CZCA01012055
[CZCA] anaerobic digester metagenome; anaerobic digester
947
871
-
Arg
ACG
[ENA]
¢þ
>W141451925
JFBM01000037
Actinomycetota
Amycolatopsis lurida NRRL 2430 [JFBM]
24253
24327
+
Arg
ACG
[ENA]
¡û
>C181028442
CP017780
Actinomycetota
Amycolatopsis sp. BJA-103 [CP017780]
8038789
8038863
+
Arg
ACG
-
¡û
>C181107797
CP024894
Actinomycetota
Amycolatopsis sp. AA4 [CP024894]
8752996
8753070
+
Arg
ACG
-
¡û
>W141712002
JMQG01000042
Actinomycetota
Amycolatopsis mediterranei [JMQG]
45444
45518
+
Arg
ACG
[ENA]
¡û
>W141712145
JMQI01000079
Actinomycetota
Amycolatopsis rifamycinica [JMQI]
136341
136267
-
Arg
ACG
[ENA]
¡û
>W141712179
JMQJ01000058
Actinomycetota
Amycolatopsis mediterranei [JMQJ]
175912
175986
+
Arg
ACG
[ENA]
¡û
>W141758909
JNYY01000002
Actinomycetota
Amycolatopsis vancoresmycina [JNYY]
28406
28332
-
Arg
ACG
[ENA]
¡û
>W141758965
JNYZ01000012
Actinomycetota
Amycolatopsis jejuensis [JNYZ]
19021
19095
+
Arg
ACG
[ENA]
¡û
>W141773695
JOIQ01000002
Actinomycetota
Streptomyces sp. NRRL F-3213 [JOIQ]
202773
202847
+
Arg
ACG
[ENA]
¡û
>W141806106
JPLW01000001
Actinomycetota
Amycolatopsis sp. MJM2582 [JPLW]
938205
938131
-
Arg
ACG
[ENA]
¡û
>C141001860
CP003777
Actinomycetota
Amycolatopsis mediterranei RB [CP003777]
291183
291257
+
Arg
ACG
[Ensembl]
¡û
>W1910812659
MVFD01000002
Actinomycetota
Amycolatopsis sp. BJA-103 [MVFD]
669084
669158
+
Arg
ACG
[ENA]
¡û
>W1911071512
NMQT01000002
Actinomycetota
Amycolatopsis thailandensis JCM 16380 [NMQT]
53990
54064
+
Arg
ACG
[ENA]
¡û
>W1911071584
NMQU01000026
Actinomycetota
Amycolatopsis alba DSM 44262 [NMQU]
77210
77284
+
Arg
ACG
[ENA]
¡û
>W1911075208
NMUL01000001
Actinomycetota
Amycolatopsis vastitatis H5 [NMUL]
213223
213149
-
Arg
ACG
[ENA]
¡û
>W1911676647
QHHU01000032
Actinomycetota
Amycolatopsis balhimycina DSM 5908 [QHHU]
37815
37889
+
Arg
ACG
[ENA]
¡û
>W1911676749
QHHW01000010
Actinomycetota
Amycolatopsis sp. WAC 01375 [QHHW]
170420
170494
+
Arg
ACG
[ENA]
¡û
>W1911676806
QHHX01000002
Actinomycetota
Amycolatopsis sp. WAC 01416 [QHHX]
105668
105742
+
Arg
ACG
[ENA]
¡û
>W1911678668
QHJI01000001
Actinomycetota
Amycolatopsis sp. WAC 04169 [QHJI]
750011
750085
+
Arg
ACG
[ENA]
¡û
>W1911678747
QHJJ01000004
Actinomycetota
Amycolatopsis sp. WAC 04182 [QHJJ]
256773
256699
-
Arg
ACG
[ENA]
¡û
>W1911678773
QHJK01000001
Actinomycetota
Amycolatopsis sp. WAC 04197 [QHJK]
459242
459316
+
Arg
ACG
[ENA]
¡û
>W1911678902
QHJM01000006
Actinomycetota
Streptomyces sp. WAC 05977 [QHJM]
123469
123395
-
Arg
ACG
[ENA]
¡û
>W1911679684
QHKL01000001
Actinomycetota
Amycolatopsis sp. WAC 01376 [QHKL]
598952
598878
-
Arg
ACG
[ENA]
¡û
>W1911814681
QZFV01000021
Actinomycetota
Amycolatopsis panacis YIM PH 21725 [QZFV]
6788
6862
+
Arg
ACG
[ENA]
¡û
>W1810058390
PDJK01000002
Actinomycetota
Amycolatopsis sulphurea DSM 46092 [PDJK]
1957628
1957554
-
Arg
ACG
[ENA]
¡û
>W1810173306
PJMY01000003
Actinomycetota
Amycolatopsis niigatensis DSM 45165 [PJMY]
2663113
2663039
-
Arg
ACG
[ENA]
¡û
>W1810237629
PPHF01000136
Actinomycetota
Amycolatopsis sp. CA-126428 [PPHF]
153681
153755
+
Arg
ACG
[ENA]
¡û
>W1810237693
PPHG01000091
Actinomycetota
Amycolatopsis sp. CA-128772 [PPHG]
117489
117415
-
Arg
ACG
[ENA]
¡û
>W1810254971
PQIA01000023
Actinomycetota
Amycolatopsis circi DSM 45561 [PQIA]
33717
33643
-
Arg
ACG
[ENA]
¡û
>C151018971
CP007219
Actinomycetota
Amycolatopsis lurida [CP007219]
6898509
6898583
+
Arg
ACG
-
¡û
>C151040839
CP008953
Actinomycetota
Amycolatopsis japonica MG417-CF17 [CP008953]
310881
310955
+
Arg
ACG
[Ensembl]
¡û
>C10100496
CP002000
Actinomycetota
Amycolatopsis mediterranei U32 [CP002000]
290333
290407
+
Arg
ACG
[Ensembl]
¡û
>C11100887
CP002896
Actinomycetota
Amycolatopsis mediterranei S699 [CP002896]
290332
290406
+
Arg
ACG
-
¡û
>W1511008772
JHBX01000108
Actinomycetota
Leucobacter japonicus CBX130 [JHBX]
280439
280513
+
Arg
ACG
[ENA]
¡û
>W1511509628
JXRD01000025
Actinomycetota
Amycolatopsis orientalis B-37 [JXRD]
215230
215156
-
Arg
ACG
[ENA]
¡û
>C121015448
CP003729
Actinomycetota
Amycolatopsis mediterranei S699 [CP003729]
291184
291258
+
Arg
ACG
-
¡û
>C131003606
CP003410
Actinomycetota
Amycolatopsis keratiniphila HCCB10007 [CP003410]
314595
314669
+
Arg
ACG
[Ensembl]
¡û
>W1610781181
LOBU01000001
Actinomycetota
Amycolatopsis regifaucium [LOBU]
400848
400774
-
Arg
ACG
[ENA]
¡û
>W1610852568
LQCI01000034
Actinomycetota
Amycolatopsis regifaucium [LQCI]
513689
513763
+
Arg
ACG
[ENA]
¡û
>W1610855447
LQMT01000229
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
89173
89099
-
Arg
ACG
[ENA]
¡û
>W1610992451
LWSF01000009
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
100270
100344
+
Arg
ACG
[ENA]
¡û
>W1710530172
FNON01000018
Actinomycetota
Amycolatopsis xylanica [FNON]
11803
11877
+
Arg
ACG
[ENA]
¡û
>W1710535461
FNSO01000003
Actinomycetota
Amycolatopsis tolypomycina [FNSO]
696299
696373
+
Arg
ACG
[ENA]
¡û
>W1710536181
FNTA01000004
Actinomycetota
Amycolatopsis lurida [FNTA]
3738430
3738356
-
Arg
ACG
[ENA]
¡û
>W1710538208
FNUJ01000005
Actinomycetota
Amycolatopsis pretoriensis [FNUJ]
322030
322104
+
Arg
ACG
[ENA]
¡û
>W1710549026
FOEF01000013
Actinomycetota
Amycolatopsis saalfeldensis [FOEF]
175978
176052
+
Arg
ACG
[ENA]
¡û
>W1710563369
FOPQ01000001
Actinomycetota
Amycolatopsis regifaucium [FOPQ]
173120
173194
+
Arg
ACG
[ENA]
¡û
>W1710571656
FOWC01000001
Actinomycetota
Amycolatopsis rubida [FOWC]
627213
627139
-
Arg
ACG
[ENA]
¡û
>W1710580390
FPJG01000006
Actinomycetota
Amycolatopsis australiensis [FPJG]
732281
732207
-
Arg
ACG
[ENA]
¡û
>W1710628082
JPRA01000027
Actinomycetota
Amycolatopsis mediterranei [JPRA]
42502
42428
-
Arg
ACG
[ENA]
¡û
>W1710773672
LIWC01000002
Actinomycetota
Amycolatopsis sp. CB00013 [LIWC]
1715132
1715206
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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