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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178646 (34 seq.)
>C025541
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
244435
244362
-
Arg
TCT
[Ensembl]
¡û
>WENV180013304
FMSI01065554
[FMSI] soil metagenome; Soil
1330
1406
+
Arg
TCT
[ENA]
¡û
>WENV181414198
OGCL01000100
[OGCL] hot springs metagenome; Hot spring water
38622
38547
-
Arg
TCT
[ENA]
¡û
>C191001216
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
2541553
2541477
-
Arg
TCT
-
¡û
>C191085233
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
1835742
1835666
-
Arg
TCT
-
¡û
>C141007944
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
1900686
1900610
-
Arg
TCT
-
¡û
>C201088931
CP040671
Cyanobacteriota
Thermosynechococcus sp. CL-1 [CP040671]
1275175
1275251
+
Arg
TCT
-
¡û
>C211280905
CP070960
Cyanobacteriota
Thermosynechococcus sp. TA-1 [CP070960]
2139176
2139252
+
Arg
TCT
-
¡û
>C231396169
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
1944648
1944724
+
Arg
TCT
-
¡û
>C241188871
CP096204
Cyanobacteriota
Thermosynechococcus sp. B0 [CP096204]
1298032
1298108
+
Arg
TCT
-
¡û
>C241190849
CP096573
Cyanobacteriota
Thermosynechococcus sp. B1 [CP096573]
1287791
1287867
+
Arg
TCT
-
¡û
>C241192265
CP097584
Cyanobacteriota
Thermosynechococcus sp. B3 [CP097584]
1293789
1293865
+
Arg
TCT
-
¡û
>C241293654
CP130344
Cyanobacteriota
Thermosynechococcus sp. PP45 [CP130344]
2180018
2180094
+
Arg
TCT
-
¡û
>C241293686
CP130346
Cyanobacteriota
Thermosynechococcus sp. HY596 [CP130346]
1284382
1284458
+
Arg
TCT
-
¡û
>C241293742
CP130347
Cyanobacteriota
Thermosynechococcus sp. JY1339 [CP130347]
1124000
1123924
-
Arg
TCT
-
¡û
>C241316042
CP134166
Cyanobacteriota
Thermosynechococcus sp. PP22 [CP134166]
2132958
2133034
+
Arg
TCT
-
¡û
>C241316080
CP134167
Cyanobacteriota
Thermosynechococcus sp. PP551 [CP134167]
2179622
2179698
+
Arg
TCT
-
¡û
>C241316118
CP134168
Cyanobacteriota
Thermosynechococcus sp. PP555 [CP134168]
2179772
2179848
+
Arg
TCT
-
¡û
>C241316156
CP134169
Cyanobacteriota
Thermosynechococcus sp. PKX82 [CP134169]
2133238
2133314
+
Arg
TCT
-
¡û
>C241316194
CP134170
Cyanobacteriota
Thermosynechococcus sp. PKX91 [CP134170]
2127719
2127795
+
Arg
TCT
-
¡û
>C241316232
CP134171
Cyanobacteriota
Thermosynechococcus sp. PKX95 [CP134171]
2127743
2127819
+
Arg
TCT
-
¡û
>C241316270
CP134172
Cyanobacteriota
Thermosynechococcus sp. WL11 [CP134172]
2127885
2127961
+
Arg
TCT
-
¡û
>C241316308
CP134173
Cyanobacteriota
Thermosynechococcus sp. WL15 [CP134173]
2127888
2127964
+
Arg
TCT
-
¡û
>C241316346
CP134174
Cyanobacteriota
Thermosynechococcus sp. WL17 [CP134174]
2127807
2127883
+
Arg
TCT
-
¡û
>C241316384
CP134175
Cyanobacteriota
Thermosynechococcus sp. GLH187 [CP134175]
2147730
2147806
+
Arg
TCT
-
¡û
>C241316422
CP134176
Cyanobacteriota
Thermosynechococcus sp. GLH333 [CP134176]
2147800
2147876
+
Arg
TCT
-
¡û
>C241316460
CP134177
Cyanobacteriota
Thermosynechococcus sp. GLH87 [CP134177]
2148007
2148083
+
Arg
TCT
-
¡û
>C241316498
CP134178
Cyanobacteriota
Thermosynechococcus sp. TG215 [CP134178]
2149911
2149987
+
Arg
TCT
-
¡û
>C241316536
CP134179
Cyanobacteriota
Thermosynechococcus sp. TG218 [CP134179]
2149911
2149987
+
Arg
TCT
-
¡û
>C241316586
CP134180
Cyanobacteriota
Thermosynechococcus sp. JY1331 [CP134180]
1124001
1123925
-
Arg
TCT
-
¡û
>C241316612
CP134181
Cyanobacteriota
Thermosynechococcus sp. QS41 [CP134181]
2129463
2129539
+
Arg
TCT
-
¡û
>C241316644
CP134182
Cyanobacteriota
Thermosynechococcus sp. HY591 [CP134182]
1284382
1284458
+
Arg
TCT
-
¡û
>C241316682
CP134183
Cyanobacteriota
Thermosynechococcus sp. HY593 [CP134183]
1284382
1284458
+
Arg
TCT
-
¡û
>C241316784
CP134200
Cyanobacteriota
Thermosynechococcus sp. QKsg1 [CP134200]
1288110
1288186
+
Arg
TCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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