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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178648 (43 seq.)
>C025513
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
1340921
1340994
+
Arg
CCT
[Ensembl]
¡û
>WENV180012772
FMSI01019452
[FMSI] soil metagenome; Soil
12637
12712
+
Arg
CCT
[ENA]
¡û
>WENV181414478
OGCL01000462
[OGCL] hot springs metagenome; Hot spring water
4243
4318
+
Arg
CCT
[ENA]
¡û
>C181030473
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
2131407
2131482
+
Arg
CCT
-
¡û
>C191001223
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
1282435
1282358
-
Arg
CCT
-
¡û
>C191085225
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
2475738
2475664
-
Arg
CCT
-
¡û
>C141007952
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
700549
700472
-
Arg
CCT
-
¡û
>W2010745128
JACKZL010000153
Cyanobacteriota
Trichormus variabilis V5 [JACKZL]
4782
4858
+
Arg
CCT
[ENA]
¡û
>W2010745273
JACKZO010000010
Cyanobacteriota
Trichormus variabilis ARAD [JACKZO]
6714
6638
-
Arg
CCT
[ENA]
¡û
>W2010745366
JACKZQ010000090
Cyanobacteriota
Trichormus variabilis FSR [JACKZQ]
17669
17745
+
Arg
CCT
[ENA]
¡û
>W2010745547
JACKZT010000020
Cyanobacteriota
Trichormus variabilis 9RC [JACKZT]
6697
6621
-
Arg
CCT
[ENA]
¡û
>W2012458181
WVID01000008
Cyanobacteriota
Nostoc sp. B(2019) [WVID]
108003
107927
-
Arg
CCT
[ENA]
¡û
>W2110229749
JACJQL010000007
Cyanobacteriota
Nostoc parmelioides FACHB-3921 [JACJQL]
30177
30253
+
Arg
CCT
[ENA]
¡û
>W2110285213
JACXXN010000020
Cyanobacteriota
Nostoc sp. MG11 [JACXXN]
20474
20550
+
Arg
CCT
[ENA]
¡û
>W2110312818
JADEXR010000081
Cyanobacteriota
aff. Roholtiella sp. LEGE 12411 [JADEXR]
17051
16975
-
Arg
CCT
[ENA]
¡û
>C201088936
CP040671
Cyanobacteriota
Thermosynechococcus sp. CL-1 [CP040671]
1962047
1962122
+
Arg
CCT
-
¡û
>C211280920
CP070960
Cyanobacteriota
Thermosynechococcus sp. TA-1 [CP070960]
660516
660441
-
Arg
CCT
-
¡û
>C231396174
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
2505142
2505067
-
Arg
CCT
-
¡û
>C241188876
CP096204
Cyanobacteriota
Thermosynechococcus sp. B0 [CP096204]
1984051
1984126
+
Arg
CCT
-
¡û
>C241190854
CP096573
Cyanobacteriota
Thermosynechococcus sp. B1 [CP096573]
1965315
1965390
+
Arg
CCT
-
¡û
>C241192270
CP097584
Cyanobacteriota
Thermosynechococcus sp. B3 [CP097584]
1970523
1970598
+
Arg
CCT
-
¡û
>C241293669
CP130344
Cyanobacteriota
Thermosynechococcus sp. PP45 [CP130344]
657877
657802
-
Arg
CCT
-
¡û
>C241293691
CP130346
Cyanobacteriota
Thermosynechococcus sp. HY596 [CP130346]
1988299
1988374
+
Arg
CCT
-
¡û
>C241293729
CP130347
Cyanobacteriota
Thermosynechococcus sp. JY1339 [CP130347]
2618974
2619049
+
Arg
CCT
-
¡û
>C241316057
CP134166
Cyanobacteriota
Thermosynechococcus sp. PP22 [CP134166]
654706
654631
-
Arg
CCT
-
¡û
>C241316095
CP134167
Cyanobacteriota
Thermosynechococcus sp. PP551 [CP134167]
658793
658718
-
Arg
CCT
-
¡û
>C241316133
CP134168
Cyanobacteriota
Thermosynechococcus sp. PP555 [CP134168]
658793
658718
-
Arg
CCT
-
¡û
>C241316171
CP134169
Cyanobacteriota
Thermosynechococcus sp. PKX82 [CP134169]
656126
656051
-
Arg
CCT
-
¡û
>C241316209
CP134170
Cyanobacteriota
Thermosynechococcus sp. PKX91 [CP134170]
670259
670184
-
Arg
CCT
-
¡û
>C241316247
CP134171
Cyanobacteriota
Thermosynechococcus sp. PKX95 [CP134171]
670259
670184
-
Arg
CCT
-
¡û
>C241316285
CP134172
Cyanobacteriota
Thermosynechococcus sp. WL11 [CP134172]
670398
670323
-
Arg
CCT
-
¡û
>C241316323
CP134173
Cyanobacteriota
Thermosynechococcus sp. WL15 [CP134173]
670401
670326
-
Arg
CCT
-
¡û
>C241316361
CP134174
Cyanobacteriota
Thermosynechococcus sp. WL17 [CP134174]
670398
670323
-
Arg
CCT
-
¡û
>C241316399
CP134175
Cyanobacteriota
Thermosynechococcus sp. GLH187 [CP134175]
662868
662793
-
Arg
CCT
-
¡û
>C241316437
CP134176
Cyanobacteriota
Thermosynechococcus sp. GLH333 [CP134176]
662938
662863
-
Arg
CCT
-
¡û
>C241316475
CP134177
Cyanobacteriota
Thermosynechococcus sp. GLH87 [CP134177]
662869
662794
-
Arg
CCT
-
¡û
>C241316513
CP134178
Cyanobacteriota
Thermosynechococcus sp. TG215 [CP134178]
665738
665663
-
Arg
CCT
-
¡û
>C241316551
CP134179
Cyanobacteriota
Thermosynechococcus sp. TG218 [CP134179]
665738
665663
-
Arg
CCT
-
¡û
>C241316573
CP134180
Cyanobacteriota
Thermosynechococcus sp. JY1331 [CP134180]
2618905
2618980
+
Arg
CCT
-
¡û
>C241316627
CP134181
Cyanobacteriota
Thermosynechococcus sp. QS41 [CP134181]
664858
664783
-
Arg
CCT
-
¡û
>C241316649
CP134182
Cyanobacteriota
Thermosynechococcus sp. HY591 [CP134182]
1988299
1988374
+
Arg
CCT
-
¡û
>C241316687
CP134183
Cyanobacteriota
Thermosynechococcus sp. HY593 [CP134183]
1988299
1988374
+
Arg
CCT
-
¡û
>C241316789
CP134200
Cyanobacteriota
Thermosynechococcus sp. QKsg1 [CP134200]
1974546
1974621
+
Arg
CCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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