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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178671 (22 seq.)
>W1711228333
LXWL01000011
Bacillota
Lactococcus garvieae [LXWL]
53721
53637
-
Leu
CAG
[ENA]
¡û
>WENV180182176
OAWO01001111
[OAWO] human gut metagenome; faeces
3276
3192
-
Leu
CAG
[ENA]
¡û
>WENV180455168
OBXO01000471
[OBXO] human gut metagenome; faeces
6339
6423
+
Leu
CAG
[ENA]
¡û
>WENV182518175
OIWP01000262
[OIWP] human gut metagenome; faeces
31167
31251
+
Leu
CAG
[ENA]
¡û
>WENV170548301
CXUD01000280
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
1607
1523
-
Leu
CAG
[ENA]
¡û
>W2011544158
SDHK01000009
Bacillota
Lactococcus petauri DB44798 [SDHK]
23887
23971
+
Leu
CAG
[ENA]
¡û
>W2011544218
SDHL01000008
Bacillota
Lactococcus petauri FISH1 [SDHL]
53701
53617
-
Leu
CAG
[ENA]
¡û
>W2011602746
SIVY01000043
Bacillota
Lactococcus petauri LG_SAV_20 [SIVY]
53780
53696
-
Leu
CAG
[ENA]
¡û
>W2110369594
JADPHA010000008
Bacillota
Lactococcus petauri 1001713B170214_170313_F10 [JADPHA]
53701
53617
-
Leu
CAG
[ENA]
¡û
>W2110437330
JAEOAS010000009
Bacillota
Lactococcus petauri H10 [JAEOAS]
53552
53468
-
Leu
CAG
[ENA]
¡û
>C211219703
CP066003
Bacillota
Lactococcus garvieae FDAARGOS_1002 [CP066003]
1050253
1050337
+
Leu
CAG
-
¡û
>C211289155
CP071293
Bacillota
Lactococcus sp. LG1074 [CP071293]
1941913
1941829
-
Leu
CAG
-
¡û
>W1510060202
CCXC01000001
Bacillota
Lactococcus garvieae M14 [CCXC]
1198210
1198294
+
Leu
CAG
[ENA]
¡û
>W1510060319
CCXF01000001
Bacillota
Lactococcus garvieae MT14 [CCXF]
1198210
1198294
+
Leu
CAG
[ENA]
¡û
>C231227807
CP086401
Bacillota
Lactococcus petauri LG4 [CP086401]
2396640
2396556
-
Leu
CAG
-
¡û
>C231353080
CP094882
Bacillota
Lactococcus petauri B1726 [CP094882]
2043867
2043783
-
Leu
CAG
-
¡û
>C231628000
CP120417
Bacillota
Lactococcus sp. bn62 [CP120417]
2081966
2081882
-
Leu
CAG
-
¡û
>C241103681
CP045924
Bacillota
Lactococcus petauri CF11 [CP045924]
1942986
1942902
-
Leu
CAG
-
¡û
>C241278502
CP127854
Bacillota
Lactococcus petauri GB97 [CP127854]
2334740
2334656
-
Leu
CAG
-
¡û
>W11157437
AFCC01000004
Bacillota
Lactococcus garvieae 21881 [AFCC]
23730
23814
+
Leu
CAG
[ENA]
¡û
>W11157525
AFCD01000079
Bacillota
Lactococcus garvieae 8831 [AFCD]
23722
23806
+
Leu
CAG
[ENA]
¡û
>W1611012250
LXWL01000011
Bacillota
Lactococcus garvieae [LXWL]
53721
53637
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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