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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178684 (114 seq.)
>W1710785808
LJIF01000009
Bacillota
Staphylococcus epidermidis [LJIF]
82356
82283
-
Pro
TGG
[ENA]
¡û
>W1711099301
LTKJ01000035
Bacillota
Staphylococcus sp. HMSC062E10 [LTKJ]
408
481
+
Pro
TGG
[ENA]
¡û
>W1711101068
LTMG01000045
Bacillota
Staphylococcus sp. HMSC62A08 [LTMG]
119
46
-
Pro
TGG
[ENA]
¡û
>W1711103008
LTOG01000097
Bacillota
Staphylococcus sp. HMSC077D08 [LTOG]
404
331
-
Pro
TGG
[ENA]
¡û
>W1711105982
LTRJ01000007
Bacillota
Staphylococcus sp. HMSC036D05 [LTRJ]
38
111
+
Pro
TGG
[ENA]
¡û
>W1711106446
LTRV01000027
Bacillota
Staphylococcus sp. HMSC034G07 [LTRV]
1172
1099
-
Pro
TGG
[ENA]
¡û
>W1711222006
LXRR01000056
Bacillota
Staphylococcus epidermidis [LXRR]
637
710
+
Pro
TGG
[ENA]
¡û
>W1711254018
LYQA01000006
Bacillota
Staphylococcus epidermidis [LYQA]
1488
1415
-
Pro
TGG
[ENA]
¡û
>W1711256103
LYSM01000076
Bacillota
Staphylococcus epidermidis [LYSM]
861
934
+
Pro
TGG
[ENA]
¡û
>W1711260229
LYVW01000045
Bacillota
Staphylococcus epidermidis [LYVW]
715
788
+
Pro
TGG
[ENA]
¡û
>W131109348
APHT01000086
Bacillota
Staphylococcus epidermidis 528m [APHT]
1560
1487
-
Pro
TGG
[ENA]
¡û
>W131182450
ARQJ01000018
Bacillota
Salinicoccus albus DSM 19776 [ARQJ]
28415
28341
-
Pro
TGG
[ENA]
¡û
>C171084821
CP018822
Bacillota
Streptococcus gallolyticus subsp. gallolyticus DSM 16831 [CP018822]
22000
22075
+
Pro
TGG
-
¡û
>WENV180168577
OAVR01002875
[OAVR] human gut metagenome; faeces
540
467
-
Pro
TGG
[ENA]
¢þ
>WENV180229025
OBCG01021206
[OBCG] human gut metagenome; human gut
145
72
-
Pro
TGG
[ENA]
¢þ
>WENV180407872
OBUR01008565
[OBUR] human gut metagenome; faeces
142
69
-
Pro
TGG
[ENA]
¢þ
>WENV180554453
OCJN01001944
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
1347
1274
-
Pro
TGG
[ENA]
¢þ
>WENV180863546
ODLH01000531
[ODLH] human metagenome; G_DNA_Tongue dorsum
803
878
+
Pro
TGG
[ENA]
¢þ
>WENV181013191
ODWN01000079
[ODWN] human metagenome; G_DNA_Tongue dorsum
35880
35955
+
Pro
TGG
[ENA]
¢þ
>WENV181124589
OEFT01000125
[OEFT] human metagenome; G_DNA_Tongue dorsum
28083
28008
-
Pro
TGG
[ENA]
¢þ
>WENV182410824
OIFM01000650
[OIFM] human gut metagenome; stool
86
159
+
Pro
TGG
[ENA]
¢þ
>WENV182643212
OJLS01006206
[OJLS] metagenome; surface
526
453
-
Pro
TGG
[ENA]
¢þ
>WENV182834008
OKEY01000126
[OKEY] human gut metagenome; human gut
4551
4624
+
Pro
TGG
[ENA]
¢þ
>WENV182837507
OKGI01000696
[OKGI] human gut metagenome; human gut
423
496
+
Pro
TGG
[ENA]
¢þ
>WENV182860451
OKOV01000691
[OKOV] human gut metagenome; human gut
150
77
-
Pro
TGG
[ENA]
¢þ
>C181159320
CP027770
Bacillota
Staphylococcus felis ATCC 49168 [CP027770]
2347785
2347712
-
Pro
TGG
-
¡û
>C181211568
LS483409
Bacillota
Streptococcus gallolyticus NCTC13773 [LS483409]
22089
22164
+
Pro
TGG
-
¡û
>C181217005
LS483491
Bacillota
Staphylococcus auricularis NCTC12101 [LS483491]
2004786
2004712
-
Pro
TGG
-
¡û
>C181217025
LS483491
Bacillota
Staphylococcus auricularis NCTC12101 [LS483491]
1484595
1484522
-
Pro
TGG
-
¡û
>C191110511
CP033735
Bacillota
Staphylococcus cohnii FDAARGOS_538 [CP033735]
1590379
1590306
-
Pro
TGG
-
¡û
>C191214627
LR134536
Bacillota
Staphylococcus epidermidis NCTC13924 [LR134536]
1658200
1658127
-
Pro
TGG
-
¡û
>W09121926
ACFR01000005
Bacillota
Staphylococcus capitis SK14 [ACFR]
150692
150619
-
Pro
TGG
[ENA]
¡û
>W141699495
JMIE01000007
Bacillota
Staphylococcus epidermidis [JMIE]
129508
129435
-
Pro
TGG
[ENA]
¡û
>W1910007765
BDEG01000174
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7128 [BDEG]
81
8
-
Pro
TGG
[ENA]
¡û
>W1910438007
FVZD01000001
Bacillota
Marinococcus halophilus Marseille-P3459 [FVZD]
481
557
+
Pro
TGG
[ENA]
¡û
>W1910613753
LGVJ01000047
Bacillota
Staphylococcus epidermidis VSE3 [LGVJ]
631
704
+
Pro
TGG
[ENA]
¡û
>W1910642337
LUBR01000073
Bacillota
Staphylococcus epidermidis SE51 [LUBR]
1751
1678
-
Pro
TGG
[ENA]
¡û
>W1910642464
LUBT01000252
Bacillota
Staphylococcus epidermidis SE53 [LUBT]
627
700
+
Pro
TGG
[ENA]
¡û
>W1910642657
LUBX01000268
Bacillota
Staphylococcus epidermidis SE57 [LUBX]
627
700
+
Pro
TGG
[ENA]
¡û
>W1911148707
NPFA01000049
Bacillota
Marinococcus halophilus KCTC 2843 [NPFA]
437
361
-
Pro
TGG
[ENA]
¡û
>W1911616212
PPQC01000060
Bacillota
Staphylococcus cohnii subsp. cohnii NCTC 11041 [PPQC]
29633
29560
-
Pro
TGG
[ENA]
¡û
>W1911617264
PPQW01000029
Bacillota
Staphylococcus auricularis NCTC 12101 [PPQW]
39038
39112
+
Pro
TGG
[ENA]
¡û
>W1911617296
PPQW01000077
Bacillota
Staphylococcus auricularis NCTC 12101 [PPQW]
232
159
-
Pro
TGG
[ENA]
¡û
>W1911617940
PPRI01000137
Bacillota
Staphylococcus felis DSM 7377 [PPRI]
466
539
+
Pro
TGG
[ENA]
¡û
>W1911618273
PPRO01000114
Bacillota
Staphylococcus massiliensis CCUG 55927 [PPRO]
961
1035
+
Pro
TGG
[ENA]
¡û
>W1911686404
QKXJ01000136
Bacillota
Staphylococcus felis F1 [QKXJ]
605
532
-
Pro
TGG
[ENA]
¡û
>W1911686446
QKXK01000038
Bacillota
Staphylococcus felis F2 [QKXK]
601
528
-
Pro
TGG
[ENA]
¡û
>W1911686505
QKXL01000092
Bacillota
Staphylococcus felis F4 [QKXL]
495
568
+
Pro
TGG
[ENA]
¡û
>W1911686551
QKXM01000115
Bacillota
Staphylococcus felis F5 [QKXM]
495
568
+
Pro
TGG
[ENA]
¡û
>W1911686582
QKXN01000043
Bacillota
Staphylococcus felis F6 [QKXN]
605
532
-
Pro
TGG
[ENA]
¡û
>W1911686655
QKXO01000188
Bacillota
Staphylococcus felis F7 [QKXO]
495
568
+
Pro
TGG
[ENA]
¡û
>W1911686681
QKXP01000090
Bacillota
Staphylococcus felis F8 [QKXP]
495
568
+
Pro
TGG
[ENA]
¡û
>W1911686748
QKXQ01000491
Bacillota
Staphylococcus felis F9 [QKXQ]
605
532
-
Pro
TGG
[ENA]
¡û
>W1911686796
QKXR01000208
Bacillota
Staphylococcus felis F12 [QKXR]
605
532
-
Pro
TGG
[ENA]
¡û
>W1911686891
QKXT01000214
Bacillota
Staphylococcus felis F14 [QKXT]
601
528
-
Pro
TGG
[ENA]
¡û
>W1911686941
QKXU01000183
Bacillota
Staphylococcus felis F15 [QKXU]
495
568
+
Pro
TGG
[ENA]
¡û
>W1911686968
QKXV01000041
Bacillota
Staphylococcus felis F16 [QKXV]
601
528
-
Pro
TGG
[ENA]
¡û
>W1911687009
QKXW01000056
Bacillota
Staphylococcus felis F17 [QKXW]
601
528
-
Pro
TGG
[ENA]
¡û
>W1911687083
QKXX01000150
Bacillota
Staphylococcus felis F18 [QKXX]
495
568
+
Pro
TGG
[ENA]
¡û
>W1911687138
QKXY01000212
Bacillota
Staphylococcus felis F19 [QKXY]
605
532
-
Pro
TGG
[ENA]
¡û
>W1911687184
QKXZ01000151
Bacillota
Staphylococcus felis F20 [QKXZ]
495
568
+
Pro
TGG
[ENA]
¡û
>W1911687233
QKYA01000071
Bacillota
Staphylococcus felis F21 [QKYA]
605
532
-
Pro
TGG
[ENA]
¡û
>W1911687270
QKYB01000046
Bacillota
Staphylococcus felis F22 [QKYB]
694
621
-
Pro
TGG
[ENA]
¡û
>W1911687367
QKYD01000143
Bacillota
Staphylococcus felis F25 [QKYD]
495
568
+
Pro
TGG
[ENA]
¡û
>W1911687440
QKYF01000023
Bacillota
Staphylococcus felis F27 [QKYF]
601
528
-
Pro
TGG
[ENA]
¡û
>W1911687494
QKYG01000033
Bacillota
Staphylococcus felis F29 [QKYG]
748
821
+
Pro
TGG
[ENA]
¡û
>W1911687556
QKYH01000146
Bacillota
Staphylococcus felis F30 [QKYH]
605
532
-
Pro
TGG
[ENA]
¡û
>W1911687586
QKYI01000032
Bacillota
Staphylococcus felis F33 [QKYI]
601
528
-
Pro
TGG
[ENA]
¡û
>W1911687650
QKYJ01000121
Bacillota
Staphylococcus felis F34 [QKYJ]
601
528
-
Pro
TGG
[ENA]
¡û
>W1911781047
QXRN01000070
Bacillota
Staphylococcus capitis SNUC 3795 [QXRN]
755
828
+
Pro
TGG
[ENA]
¡û
>W1911781345
QXRS01000049
Bacillota
Staphylococcus capitis SNUC 807 [QXRS]
755
828
+
Pro
TGG
[ENA]
¡û
>W1911782534
QXSO01000184
Bacillota
Staphylococcus epidermidis SNUC 4204 [QXSO]
495
568
+
Pro
TGG
[ENA]
¡û
>W1911785235
QXUO01000103
Bacillota
Staphylococcus warneri SNUC 4527 [QXUO]
733
806
+
Pro
TGG
[ENA]
¡û
>W1911786413
QXVJ01000055
Bacillota
Staphylococcus saprophyticus SNUC 2373 [QXVJ]
18860
18787
-
Pro
TGG
[ENA]
¡û
>W1810076860
PEIT01000034
Bacillota
Staphylococcus epidermidis SCH-4 [PEIT]
740
813
+
Pro
TGG
[ENA]
¡û
>W1810113664
PHKN01000021
Bacillota
Staphylococcus epidermidis SH06_17 [PHKN]
467
540
+
Pro
TGG
[ENA]
¡û
>W1810154055
PIYR01000078
Bacillota
Staphylococcus epidermidis bTMA-013 [PIYR]
35870
35797
-
Pro
TGG
[ENA]
¡û
>W1810429117
PYZC01000060
Bacillota
Staphylococcus epidermidis SNUC 1209 [PYZC]
4306
4233
-
Pro
TGG
[ENA]
¡û
>W1810434862
PZDB01000045
Bacillota
Staphylococcus capitis SNUC 2784 [PZDB]
755
828
+
Pro
TGG
[ENA]
¡û
>W1810435190
PZDH01000020
Bacillota
Staphylococcus auricularis SNUC 3034 [PZDH]
38770
38844
+
Pro
TGG
[ENA]
¡û
>W1810435202
PZDH01000053
Bacillota
Staphylococcus auricularis SNUC 3034 [PZDH]
2424
2351
-
Pro
TGG
[ENA]
¡û
>W1810435747
PZDR01000014
Bacillota
Staphylococcus arlettae SNUC 1330 [PZDR]
53585
53512
-
Pro
TGG
[ENA]
¡û
>W1810692499
QLJB01000031
Bacillota
Staphylococcus arlettae Bari3 [QLJB]
29802
29729
-
Pro
TGG
[ENA]
¡û
>W1510562674
CTEI01000003
Bacillota
Paraliobacillus sp. PM-2 [CTEI]
546
470
-
Pro
TGG
[ENA]
¡û
>W1510563006
CTEO01000029
Bacillota
Staphylococcus capitis CR05 [CTEO]
542
469
-
Pro
TGG
[ENA]
¡û
>W1510642406
CVLR01000095
Bacillota
Streptococcus pneumoniae SMRU1011 [CVLR]
5205
5278
+
Pro
TGG
[ENA]
¡û
>W1511326029
JQHC01000020
Bacillota
Staphylococcus epidermidis C10C [JQHC]
628
701
+
Pro
TGG
[ENA]
¡û
>W1511394149
JTAY01000002
Bacillota
Staphylococcus epidermidis FDAARGOS_83 [JTAY]
1848135
1848062
-
Pro
TGG
[ENA]
¡û
>W1511438841
JUMX01000002
Bacillota
Staphylococcus epidermidis 936_SEPI [JUMX]
72
145
+
Pro
TGG
[ENA]
¡û
>W1511438885
JUMZ01000008
Bacillota
Staphylococcus epidermidis 934_SEPI [JUMZ]
72
145
+
Pro
TGG
[ENA]
¡û
>W1511439820
JUOJ01000005
Bacillota
Staphylococcus epidermidis 91_SEPI [JUOJ]
72
145
+
Pro
TGG
[ENA]
¡û
>W1511447613
JUYU01000024
Bacillota
Staphylococcus capitis 645_SEPI [JUYU]
539
466
-
Pro
TGG
[ENA]
¡û
>W1511448908
JVAK01000033
Bacillota
Staphylococcus epidermidis 604_SEPI [JVAK]
646
573
-
Pro
TGG
[ENA]
¡û
>W1511450582
JVCF01000022
Bacillota
Staphylococcus capitis 558_SAUR [JVCF]
649
576
-
Pro
TGG
[ENA]
¡û
>W1511453819
JVFN01000011
Bacillota
Staphylococcus epidermidis 479_SEPI [JVFN]
72
145
+
Pro
TGG
[ENA]
¡û
>W1511454608
JVGE01000081
Bacillota
Staphylococcus epidermidis 460_SEPI [JVGE]
271
344
+
Pro
TGG
[ENA]
¡û
>W1511455284
JVGQ01000061
Bacillota
Staphylococcus epidermidis 450_SEPI [JVGQ]
5238
5165
-
Pro
TGG
[ENA]
¡û
>W1511468703
JVUN01000004
Bacillota
Staphylococcus epidermidis 1306.rep2_SEPI [JVUN]
72
145
+
Pro
TGG
[ENA]
¡û
>W1511474696
JWCD01000044
Bacillota
Staphylococcus epidermidis 1129_SEPI [JWCD]
151
78
-
Pro
TGG
[ENA]
¡û
>W1511476101
JWEE01002371
Bacillota
Staphylococcus epidermidis 1068_SEPI [JWEE]
151
78
-
Pro
TGG
[ENA]
¡û
>W1511476394
JWEO01000069
Bacillota
Staphylococcus epidermidis 1056_SEPI [JWEO]
151
78
-
Pro
TGG
[ENA]
¡û
>W1511477865
JWGV01000103
Bacillota
Staphylococcus epidermidis 100_SEPI [JWGV]
69
142
+
Pro
TGG
[ENA]
¡û
>W1511568149
LAIU01000001
Bacillota
Staphylococcus carnosus subsp. utilis LTH7013 [LAIU]
940
1013
+
Pro
TGG
[ENA]
¡û
>W121083678
AKHI01000021
Bacillota
Staphylococcus epidermidis NIH05003 [AKHI]
4222
4149
-
Pro
TGG
[ENA]
¡û
>W121113924
ALOZ01000006
Bacillota
Staphylococcus cohnii AL1 [ALOZ]
403
330
-
Pro
TGG
[ENA]
¡û
>W1610593201
LDTI01000050
Bacillota
Staphylococcus epidermidis [LDTI]
854
927
+
Pro
TGG
[ENA]
¡û
>W1610593799
LDTT01000057
Bacillota
Staphylococcus warneri [LDTT]
860
787
-
Pro
TGG
[ENA]
¡û
>W1610649614
LJIF01000009
Bacillota
Staphylococcus epidermidis [LJIF]
82356
82283
-
Pro
TGG
[ENA]
¡û
>W1611006475
LXRR01000056
Bacillota
Staphylococcus epidermidis [LXRR]
637
710
+
Pro
TGG
[ENA]
¡û
>W1611018031
LYQA01000006
Bacillota
Staphylococcus epidermidis [LYQA]
1488
1415
-
Pro
TGG
[ENA]
¡û
>W1611019479
LYSM01000076
Bacillota
Staphylococcus epidermidis [LYSM]
861
934
+
Pro
TGG
[ENA]
¡û
>W1611022140
LYVW01000045
Bacillota
Staphylococcus epidermidis [LYVW]
715
788
+
Pro
TGG
[ENA]
¡û
>W1710712481
LDTI01000050
Bacillota
Staphylococcus epidermidis [LDTI]
854
927
+
Pro
TGG
[ENA]
¡û
>W1710713079
LDTT01000057
Bacillota
Staphylococcus warneri [LDTT]
860
787
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK