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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178727 (34 seq.)
>W1711705090
MSQD01000001
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
6303
6227
-
Asp
GTC
[ENA]
¡û
>W1711705124
MSQD01000030
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
398
474
+
Asp
GTC
[ENA]
¡û
>WENV180871361
ODLN01047075
[ODLN] human metagenome; G_DNA_Stool
229
305
+
Asp
GTC
[ENA]
¢þ
>WENV181197159
OERA01000450
[OERA] metagenome; Caecal content
5262
5186
-
Asp
GTC
[ENA]
¢þ
>WENV181200593
OERL01000558
[OERL] metagenome; Caecal content
7193
7117
-
Asp
GTC
[ENA]
¢þ
>WENV181203970
OERX01012143
[OERX] metagenome; Caecal content
683
607
-
Asp
GTC
[ENA]
¢þ
>WENV181248351
OFFL01002272
[OFFL] mouse gut metagenome; faeces
2008
2084
+
Asp
GTC
[ENA]
¢þ
>WENV181249650
OFFM01043460
[OFFM] mouse gut metagenome; faeces
92
16
-
Asp
GTC
[ENA]
¢þ
>WENV181257870
OFFU01008234
[OFFU] mouse gut metagenome; faeces
2007
2083
+
Asp
GTC
[ENA]
¢þ
>WENV181279926
OFGN01009930
[OFGN] mouse gut metagenome; faeces
2002
2078
+
Asp
GTC
[ENA]
¢þ
>WENV181289069
OFGZ01006883
[OFGZ] mouse gut metagenome; faeces
1149
1073
-
Asp
GTC
[ENA]
¢þ
>W141193974
AYSN01000058
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
41480
41404
-
Asp
GTC
[ENA]
¡û
>W141194001
AYSN01000080
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
262
338
+
Asp
GTC
[ENA]
¡û
>W141238340
BBKT01000020
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
16171
16095
-
Asp
GTC
[ENA]
¡û
>W141238376
BBKT01000088
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
662
586
-
Asp
GTC
[ENA]
¡û
>WENV183770542
PPYE01436396
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
121
45
-
Asp
GTC
[ENA]
¢þ
>WENV170637286
JFBN01315908
[JFBN] chicken gut metagenome; ceca of Broiler chicken
84
8
-
Asp
GTC
[ENA]
¢þ
>WENV170637305
JFBN01316222
[JFBN] chicken gut metagenome; ceca of Broiler chicken
357
281
-
Asp
GTC
[ENA]
¢þ
>WENV170638555
JFBN01490660
[JFBN] chicken gut metagenome; ceca of Broiler chicken
129
205
+
Asp
GTC
[ENA]
¢þ
>WENV170638575
JFBN01494746
[JFBN] chicken gut metagenome; ceca of Broiler chicken
287
363
+
Asp
GTC
[ENA]
¢þ
>C181021908
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
1622565
1622641
+
Asp
GTC
-
¡û
>C181021936
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
341075
340999
-
Asp
GTC
-
¡û
>W09134983
ACVG01000003
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
63666
63742
+
Asp
GTC
[ENA]
¡û
>W09134995
ACVG01000009
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
82707
82631
-
Asp
GTC
[ENA]
¡û
>W1910747720
MINB01000020
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
6693
6617
-
Asp
GTC
[ENA]
¡û
>W1910747727
MINB01000022
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
48748
48672
-
Asp
GTC
[ENA]
¡û
>C10113825
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
454589
454665
+
Asp
GTC
[Ensembl]
¡û
>C10113851
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
1988041
1987965
-
Asp
GTC
[Ensembl]
¡û
>C11123291
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
378535
378611
+
Asp
GTC
[Ensembl]
¡û
>C11123309
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
890515
890591
+
Asp
GTC
[Ensembl]
¡û
>W11150426
AEVQ01000002
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
225555
225479
-
Asp
GTC
[ENA]
¡û
>W11150463
AEVQ01000017
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
24618
24542
-
Asp
GTC
[ENA]
¡û
>C121007620
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
1084566
1084642
+
Asp
GTC
[Ensembl]
¡û
>C121007644
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
2510026
2509950
-
Asp
GTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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