This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178889 (14 seq.)
>W1710806126
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
2459440
2459525
+
Tyr
GTA
[ENA]
¡û
>WENV180044062
LQAJ01000841
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
3009
3094
+
Tyr
GTA
[ENA]
¡û
>WENV170419477
CEUM01129283
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
12644
12729
+
Tyr
GTA
[ENA]
¡û
>WENV170438713
CEUU01231858
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4
89
+
Tyr
GTA
[ENA]
¡û
>WENV170439038
CEUV01009454
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6213
6128
-
Tyr
GTA
[ENA]
¡û
>WENV170901923
MDTD01177896
[MDTD] marine metagenome; seawater
6908
6993
+
Tyr
GTA
[ENA]
¡û
>C181226988
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
4100303
4100388
+
Tyr
GTA
-
¡û
>W2011654909
SOBK01000012
Thermodesulfobacteriota
Pseudodesulfovibrio indicus DSM 101483 [SOBK]
13668
13753
+
Tyr
GTA
[ENA]
¡û
>W2110515227
JAFMPN010000010
Thermodesulfobacteriota
Desulfovibrio sp. Huiquan2017 [JAFMPN]
185435
185350
-
Tyr
GTA
[ENA]
¡û
>C231631007
CP120635
Thermodesulfobacteriota
Pseudodesulfovibrio sp. MCM B-1480 [CP120635]
1246515
1246600
+
Tyr
GTA
-
¡û
>C241108987
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
2585921
2586006
+
Tyr
GTA
-
¡û
>C241149549
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
3941424
3941339
-
Tyr
GTA
-
¡û
>W11149145
AEUJ01000007
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
133318
133403
+
Tyr
GTA
[ENA]
¡û
>C121008992
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
3781462
3781547
+
Tyr
GTA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK