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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178934 (74 seq.)
>W1710809863
LKFB01000022
Betaproteobacteria
Comamonas thiooxydans [LKFB]
8064
8140
+
Met
CAT
[ENA]
¡û
>W1711628373
MPOE01000014
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
303456
303532
+
Met
CAT
[ENA]
¡û
>W1711628374
MPOE01000014
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
303539
303615
+
Met
CAT
[ENA]
¡û
>W1711628490
MPOF01000046
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
366335
366259
-
Met
CAT
[ENA]
¡û
>W1711628491
MPOF01000046
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
366252
366176
-
Met
CAT
[ENA]
¡û
>W131104555
APCR01000490
Betaproteobacteria
Comamonas sp. B-9 [APCR]
1419
1495
+
Met
CAT
[ENA]
¡û
>W131104556
APCR01000490
Betaproteobacteria
Comamonas sp. B-9 [APCR]
1634
1710
+
Met
CAT
[ENA]
¡û
>W131104557
APCR01000490
Betaproteobacteria
Comamonas sp. B-9 [APCR]
1849
1925
+
Met
CAT
[ENA]
¡û
>W131104558
APCR01000490
Betaproteobacteria
Comamonas sp. B-9 [APCR]
2064
2140
+
Met
CAT
[ENA]
¡û
>C171104894
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
1845648
1845572
-
Met
CAT
-
¡û
>C171104895
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
1845565
1845489
-
Met
CAT
-
¡û
>WENV181732222
OGQD01017043
[OGQD] human gut metagenome; faeces
144
68
-
Met
CAT
[ENA]
¢þ
>WENV181732508
OGQD01045308
[OGQD] human gut metagenome; faeces
818
742
-
Met
CAT
[ENA]
¢þ
>W141237777
BBJR01000040
Betaproteobacteria
Comamonas aquatica NBRC 14918 [BBJR]
63422
63498
+
Met
CAT
[ENA]
¡û
>W141237778
BBJR01000040
Betaproteobacteria
Comamonas aquatica NBRC 14918 [BBJR]
63505
63581
+
Met
CAT
[ENA]
¡û
>W141319029
JBOK01000005
Betaproteobacteria
Comamonas aquatica DA1877 [JBOK]
63351
63275
-
Met
CAT
[ENA]
¡û
>W141319030
JBOK01000005
Betaproteobacteria
Comamonas aquatica DA1877 [JBOK]
63268
63192
-
Met
CAT
[ENA]
¡û
>WENV183730301
PJTR01017632
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
458
382
-
Met
CAT
[ENA]
¢þ
>WENV183731170
PJTS01015030
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
167
243
+
Met
CAT
[ENA]
¢þ
>WENV183743265
PJUJ01000276
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
11613
11537
-
Met
CAT
[ENA]
¢þ
>WENV183743266
PJUJ01000276
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
11328
11252
-
Met
CAT
[ENA]
¢þ
>WENV183744019
PJUK01000151
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
18864
18788
-
Met
CAT
[ENA]
¢þ
>WENV183744020
PJUK01000151
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
18579
18503
-
Met
CAT
[ENA]
¢þ
>WENV183744776
PJUL01000214
[PJUL] feces metagenome; Chicken feces enriched on filter paper
26598
26522
-
Met
CAT
[ENA]
¢þ
>WENV183744777
PJUL01000214
[PJUL] feces metagenome; Chicken feces enriched on filter paper
26313
26237
-
Met
CAT
[ENA]
¢þ
>W1911573292
PDEA01000001
Betaproteobacteria
Comamonas terrigena FDAARGOS_394 [PDEA]
4539928
4540004
+
Met
CAT
[ENA]
¡û
>W1911573293
PDEA01000001
Betaproteobacteria
Comamonas terrigena FDAARGOS_394 [PDEA]
4540213
4540289
+
Met
CAT
[ENA]
¡û
>W1810580615
QETI01000002
Betaproteobacteria
Comamonas sp. JNW [QETI]
184257
184181
-
Met
CAT
[ENA]
¡û
>W1810580616
QETI01000002
Betaproteobacteria
Comamonas sp. JNW [QETI]
184042
183966
-
Met
CAT
[ENA]
¡û
>W1510015230
BBQP01000037
Betaproteobacteria
Comamonas testosteroni KF712 [BBQP]
37726
37650
-
Met
CAT
[ENA]
¡û
>W1510019166
BBVD01000003
Betaproteobacteria
Comamonas thiooxydans DSM 17888 [BBVD]
289757
289833
+
Met
CAT
[ENA]
¡û
>W1510019807
BBXH01000014
Betaproteobacteria
Comamonas sp. E6 [BBXH]
155829
155905
+
Met
CAT
[ENA]
¡û
>W10119418
ADVQ01000099
Betaproteobacteria
Comamonas thiooxydans S44 [ADVQ]
31816
31740
-
Met
CAT
[ENA]
¡û
>W1510741160
CYHD01000002
Betaproteobacteria
Comamonas thiooxydans DSM 17888 [CYHD]
140728
140804
+
Met
CAT
[ENA]
¡û
>W11125638
ADVQ01000099
Betaproteobacteria
Comamonas thiooxydans S44 [ADVQ]
31816
31740
-
Met
CAT
[ENA]
¡û
>W1511516946
JXWN01000060
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
140346
140270
-
Met
CAT
[ENA]
¡û
>W1511516947
JXWN01000060
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
140263
140187
-
Met
CAT
[ENA]
¡û
>W1511584182
LAVC01000023
Betaproteobacteria
Comamonas thiooxydans KY3 [LAVC]
100066
100142
+
Met
CAT
[ENA]
¡û
>C161002886
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
1190470
1190394
-
Met
CAT
-
¡û
>C161002887
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
1190387
1190311
-
Met
CAT
-
¡û
>C161107155
LN879547
Betaproteobacteria
Comamonas thiooxydans [LN879547]
4277271
4277347
+
Met
CAT
-
¡û
>W1610028500
AWOS01000045
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOS]
26240
26316
+
Met
CAT
[ENA]
¡û
>W1610028532
AWOT01000002
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOT]
140903
140979
+
Met
CAT
[ENA]
¡û
>W1610028612
AWOU01000019
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOU]
27723
27799
+
Met
CAT
[ENA]
¡û
>W1610028665
AWOV01000006
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOV]
140205
140281
+
Met
CAT
[ENA]
¡û
>W1610028823
AWTM01000095
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTM]
8018
8094
+
Met
CAT
[ENA]
¡û
>W1610028880
AWTN01000104
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
11558
11634
+
Met
CAT
[ENA]
¡û
>W1610028957
AWTO01000162
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
8001
8077
+
Met
CAT
[ENA]
¡û
>W1610029028
AWTP01000129
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
8019
8095
+
Met
CAT
[ENA]
¡û
>W1610029047
AWTQ01000002
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTQ]
134683
134759
+
Met
CAT
[ENA]
¡û
>W1610062639
BCNR01000008
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
21883
21959
+
Met
CAT
[ENA]
¡û
>W1610062640
BCNR01000008
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
22168
22244
+
Met
CAT
[ENA]
¡û
>W1610062775
BCNT01000007
Betaproteobacteria
Comamonas terrae [BCNT]
31988
31912
-
Met
CAT
[ENA]
¡û
>W1610062776
BCNT01000007
Betaproteobacteria
Comamonas terrae [BCNT]
31779
31703
-
Met
CAT
[ENA]
¡û
>W1610609954
LFYP01000019
Betaproteobacteria
Comamonas kerstersii [LFYP]
8479
8403
-
Met
CAT
[ENA]
¡û
>W1610609955
LFYP01000019
Betaproteobacteria
Comamonas kerstersii [LFYP]
8396
8320
-
Met
CAT
[ENA]
¡û
>W1610631794
LIOM01000002
Betaproteobacteria
Comamonas thiooxydans [LIOM]
140728
140804
+
Met
CAT
[ENA]
¡û
>W1610673918
LKFB01000022
Betaproteobacteria
Comamonas thiooxydans [LKFB]
8064
8140
+
Met
CAT
[ENA]
¡û
>W1710024402
AWOS01000045
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOS]
26240
26316
+
Met
CAT
[ENA]
¡û
>W1710024434
AWOT01000002
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOT]
140903
140979
+
Met
CAT
[ENA]
¡û
>W1710024514
AWOU01000019
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOU]
27723
27799
+
Met
CAT
[ENA]
¡û
>W1710024567
AWOV01000006
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOV]
140205
140281
+
Met
CAT
[ENA]
¡û
>W1710026193
AWTM01000095
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTM]
8018
8094
+
Met
CAT
[ENA]
¡û
>W1710026250
AWTN01000104
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
11558
11634
+
Met
CAT
[ENA]
¡û
>W1710026327
AWTO01000162
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTO]
8001
8077
+
Met
CAT
[ENA]
¡û
>W1710026398
AWTP01000129
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
8019
8095
+
Met
CAT
[ENA]
¡û
>W1710026417
AWTQ01000002
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTQ]
134683
134759
+
Met
CAT
[ENA]
¡û
>W1710060115
BCNR01000008
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
21883
21959
+
Met
CAT
[ENA]
¡û
>W1710060116
BCNR01000008
Betaproteobacteria
Comamonas terrigena NBRC 13299 [BCNR]
22168
22244
+
Met
CAT
[ENA]
¡û
>W1710060251
BCNT01000007
Betaproteobacteria
Comamonas terrae [BCNT]
31988
31912
-
Met
CAT
[ENA]
¡û
>W1710060252
BCNT01000007
Betaproteobacteria
Comamonas terrae [BCNT]
31779
31703
-
Met
CAT
[ENA]
¡û
>W1710731299
LFYP01000019
Betaproteobacteria
Comamonas kerstersii [LFYP]
8479
8403
-
Met
CAT
[ENA]
¡û
>W1710731300
LFYP01000019
Betaproteobacteria
Comamonas kerstersii [LFYP]
8396
8320
-
Met
CAT
[ENA]
¡û
>W1710764679
LIOM01000002
Betaproteobacteria
Comamonas thiooxydans [LIOM]
140728
140804
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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