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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178972 (106 seq.)
>W1710880592
LMSL01000006
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
54248
54324
+
Arg
TCT
[ENA]
¡û
>C171063399
CP017480
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480]
16019
15943
-
Arg
TCT
-
¡û
>WENV180017628
FSXK01001892
[FSXK] metagenome; soil
11782
11706
-
Arg
TCT
[ENA]
¡û
>WENV180035725
FTLB01001621
[FTLB] metagenome; soil
117
41
-
Arg
TCT
[ENA]
¡û
>WENV180283476
OBID01000219
[OBID] metagenome; sludge
9158
9082
-
Arg
TCT
[ENA]
¡û
>WENV180695194
OCZS013165229
[OCZS] soil metagenome; soil
122
198
+
Arg
TCT
[ENA]
¡û
>WENV181166580
OEIU01000699
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
13369
13293
-
Arg
TCT
[ENA]
¡û
>WENV181172252
OEIV010565035
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
23
99
+
Arg
TCT
[ENA]
¡û
>WENV182560288
OJDT01025672
[OJDT] seawater metagenome; Sea water
109
185
+
Arg
TCT
[ENA]
¡û
>WENV182563706
OJEC01018419
[OJEC] seawater metagenome; Sea water
65
141
+
Arg
TCT
[ENA]
¡û
>WENV183093424
OLMB01000189
[OLMB] soil metagenome; soil
962
1038
+
Arg
TCT
[ENA]
¡û
>WENV183697507
OUNK010000066
[OUNK] metagenome; soil
22028
22104
+
Arg
TCT
[ENA]
¡û
>WENV170557134
CXWL01019826
[CXWL] groundwater metagenome; biofilm material
2284
2360
+
Arg
TCT
[ENA]
¡û
>C191003490
AP018560
Gammaproteobacteria
Aerosticca soli Dysh456 [AP018560]
2102583
2102507
-
Arg
TCT
-
¡û
>C191138622
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
1406701
1406625
-
Arg
TCT
-
¡û
>C191145540
CP035704
Gammaproteobacteria
Pseudolysobacter antarcticus AQ6-296 [CP035704]
2113805
2113881
+
Arg
TCT
-
¡û
>C191186027
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
3033351
3033275
-
Arg
TCT
-
¡û
>W141564949
JIBD01000016
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
586602
586526
-
Arg
TCT
[ENA]
¡û
>W141820709
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
4116477
4116401
-
Arg
TCT
[ENA]
¡û
>W141820787
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
1660303
1660379
+
Arg
TCT
[ENA]
¡û
>W141821282
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
706988
706912
-
Arg
TCT
[ENA]
¡û
>W1910896580
NFZS01000001
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
1960867
1960943
+
Arg
TCT
[ENA]
¡û
>W1911199819
NRDP01000030
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
34010
33934
-
Arg
TCT
[ENA]
¡û
>W1810477576
QAOX01000006
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
289709
289633
-
Arg
TCT
[ENA]
¡û
>W1810485576
QAVX01000010
Gammaproteobacteria
Dyella sp. C11 [QAVX]
6065
5989
-
Arg
TCT
[ENA]
¡û
>W1810597197
QGHC01000001
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
367544
367620
+
Arg
TCT
[ENA]
¡û
>W1810628324
QICJ01000001
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
230289
230213
-
Arg
TCT
[ENA]
¡û
>W1810762588
QQAH01000001
Gammaproteobacteria
Dyella tabacisoli L4-6 [QQAH]
410664
410588
-
Arg
TCT
[ENA]
¡û
>W1810783262
QQSY01000003
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
558650
558726
+
Arg
TCT
[ENA]
¡û
>W1810785104
QRBE01000008
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
80351
80275
-
Arg
TCT
[ENA]
¡û
>W1810785132
QRBF01000001
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
904678
904602
-
Arg
TCT
[ENA]
¡û
>W2010534279
JAAOYX010000001
Gammaproteobacteria
Lutibacter sp. SG786 [JAAOYX]
918650
918726
+
Arg
TCT
[ENA]
¡û
>W2010537221
JAAQQR010000014
Gammaproteobacteria
Luteibacter jiangsuensis CGMCC 1.10133 [JAAQQR]
5437
5361
-
Arg
TCT
[ENA]
¡û
>W2010537805
JAAQTL010000001
Gammaproteobacteria
Luteibacter yeojuensis DSM 17673 [JAAQTL]
1506692
1506616
-
Arg
TCT
[ENA]
¡û
>W2010543709
JAARLY010000003
Gammaproteobacteria
Oleiagrimonas sp. C23AA [JAARLY]
181187
181263
+
Arg
TCT
[ENA]
¡û
>W2010717732
JACHYH010000002
Gammaproteobacteria
Luteibacter sp. Sphag1AF [JACHYH]
111697
111621
-
Arg
TCT
[ENA]
¡û
>W2010910273
MSZV01000048
Gammaproteobacteria
Fulvimonas soli LMG 19981 [MSZV]
63779
63703
-
Arg
TCT
[ENA]
¡û
>W2010957074
NFZS01000001
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
1960867
1960943
+
Arg
TCT
[ENA]
¡û
>W2010957115
NFZV01000004
Gammaproteobacteria
Alkalilimnicola ehrlichii AK92 [NFZV]
84651
84727
+
Arg
TCT
[ENA]
¡û
>W2010957165
NFZW01000005
Gammaproteobacteria
Alkalilimnicola ehrlichii AK93 [NFZW]
85042
85118
+
Arg
TCT
[ENA]
¡û
>W2011048035
NRDP01000030
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
34010
33934
-
Arg
TCT
[ENA]
¡û
>W2011404625
RCWW01000001
Gammaproteobacteria
Dyella sp. YR388 [RCWW]
1143282
1143358
+
Arg
TCT
[ENA]
¡û
>W2011509557
RYYV01000001
Gammaproteobacteria
Dyella sp. 4M-K27 [RYYV]
86971
86895
-
Arg
TCT
[ENA]
¡û
>W2011509770
RYZR01000003
Gammaproteobacteria
Dyella sp. DHOA06 [RYZR]
537748
537672
-
Arg
TCT
[ENA]
¡û
>W2011529189
SAYT01000002
Gammaproteobacteria
Dyella sp. DHC06 [SAYT]
414001
413925
-
Arg
TCT
[ENA]
¡û
>W2011603238
SIZZ01000001
Gammaproteobacteria
Dyella terrae KACC 12748 [SIZZ]
533753
533829
+
Arg
TCT
[ENA]
¡û
>W2011613346
SJTG01000001
Gammaproteobacteria
Dyella soli KACC 12747 [SJTG]
1869214
1869138
-
Arg
TCT
[ENA]
¡û
>W2011613380
SJTG01000002
Gammaproteobacteria
Dyella soli KACC 12747 [SJTG]
1214795
1214719
-
Arg
TCT
[ENA]
¡û
>W2011631237
SMCS01000001
Gammaproteobacteria
Luteibacter rhizovicinus LP_13_YM [SMCS]
396770
396846
+
Arg
TCT
[ENA]
¡û
>W2012047691
VIVY01000002
Gammaproteobacteria
Luteibacter yeojuensis 583 [VIVY]
405208
405284
+
Arg
TCT
[ENA]
¡û
>W2012125858
VRTS01000001
Gammaproteobacteria
Lysobacter sp. Alg18-2.2 [VRTS]
448261
448185
-
Arg
TCT
[ENA]
¡û
>W2110011755
BCPR01000017
Gammaproteobacteria
Dyella sp. EPa41 [BCPR]
376
452
+
Arg
TCT
[ENA]
¡û
>W2110027215
BMIZ01000001
Gammaproteobacteria
Dyella caseinilytica CGMCC 1.15434 [BMIZ]
2329734
2329810
+
Arg
TCT
[ENA]
¡û
>W2110027273
BMJA01000001
Gammaproteobacteria
Dyella nitratireducens CGMCC 1.15439 [BMJA]
195166
195090
-
Arg
TCT
[ENA]
¡û
>ENV09004016
ADIG01001044
Groundwater metagenome 4000601.lucy.pga.C1
164544
164620
+
Arg
TCT
[ENA]
¡û
>W2110161023
JAAVUW010000003
Gammaproteobacteria
Luteibacter sp. dw_328 [JAAVUW]
254087
254011
-
Arg
TCT
[ENA]
¡û
>W2110289932
JACYTR010000016
Gammaproteobacteria
Pseudoxanthomonas sp. CAU 1598 [JACYTR]
57874
57798
-
Arg
TCT
[ENA]
¡û
>W2110295369
JACZZA010000007
Gammaproteobacteria
Dyella sp. 7MK23 [JACZZA]
106487
106411
-
Arg
TCT
[ENA]
¡û
>W2110325932
JADIKC010000003
Gammaproteobacteria
Dyella kyungheensis THG-B117 [JADIKC]
858877
858953
+
Arg
TCT
[ENA]
¡û
>W2110325981
JADIKE010000035
Gammaproteobacteria
Dyella flava DHOC52 [JADIKE]
142954
142878
-
Arg
TCT
[ENA]
¡û
>W2110326032
JADIKF010000039
Gammaproteobacteria
Dyella mobilis DHON07 [JADIKF]
939650
939726
+
Arg
TCT
[ENA]
¡û
>W2110403165
JADZLQ010000001
Gammaproteobacteria
Rhodanobacteraceae bacterium NC2-4-308 [JADZLQ]
788448
788372
-
Arg
TCT
[ENA]
¡û
>W2110403223
JADZLR010000002
Gammaproteobacteria
Rhodanobacteraceae bacterium NA3-4-109 [JADZLR]
1418439
1418515
+
Arg
TCT
[ENA]
¡û
>W2110425277
JAELTQ010000002
Gammaproteobacteria
Dyella sp. ASV24 [JAELTQ]
103452
103528
+
Arg
TCT
[ENA]
¡û
>W2110425481
JAELTT010000031
Gammaproteobacteria
Dyella sp. ASV21 [JAELTT]
15533
15609
+
Arg
TCT
[ENA]
¡û
>W2110557788
JAGJRS010000034
Gammaproteobacteria
Frateuria sp. MAH-13 [JAGJRS]
233524
233600
+
Arg
TCT
[ENA]
¡û
>W2110599142
JAHEVH010000004
Gammaproteobacteria
Dyella sp. LX-1 [JAHEVH]
169266
169190
-
Arg
TCT
[ENA]
¡û
>W2110600209
JAHFVJ010000002
Gammaproteobacteria
Dyella sp. LX-66 [JAHFVJ]
473126
473202
+
Arg
TCT
[ENA]
¡û
>C211133286
CP060412
Gammaproteobacteria
Dyella sp. G9 [CP060412]
167899
167823
-
Arg
TCT
-
¡û
>C211186160
CP064030
Gammaproteobacteria
Dyella caseinilytica DHOB09 [CP064030]
1674278
1674354
+
Arg
TCT
-
¡û
>C231095986
CP063231
Gammaproteobacteria
Luteibacter sp. EIF3 [CP063231]
2698013
2697937
-
Arg
TCT
-
¡û
>C231252173
CP088252
Gammaproteobacteria
Frateuria sp. 5GH9-11 [CP088252]
1348458
1348534
+
Arg
TCT
-
¡û
>C231262017
CP089414
Gammaproteobacteria
Dyella terrae Ely Copper Mine [CP089414]
1201427
1201351
-
Arg
TCT
-
¡û
>C231362848
CP095740
Gammaproteobacteria
Luteibacter sp. 321 [CP095740]
3246650
3246574
-
Arg
TCT
-
¡û
>C231362891
CP095741
Gammaproteobacteria
Luteibacter sp. 335 [CP095741]
3305809
3305733
-
Arg
TCT
-
¡û
>C241305427
CP132911
Gammaproteobacteria
Dyella sp. A6 [CP132911]
2077822
2077746
-
Arg
TCT
-
¡û
>C241321625
CP134867
Gammaproteobacteria
Dyella sp. BiH032 [CP134867]
2230874
2230950
+
Arg
TCT
-
¡û
>W2310024356
BSNP01000007
Gammaproteobacteria
Dyella nitratireducens NBRC 111472 [BSNP]
2264808
2264884
+
Arg
TCT
[ENA]
¡û
>W2310024378
BSNQ01000003
Gammaproteobacteria
Dyella lipolytica NBRC 111473 [BSNQ]
350870
350946
+
Arg
TCT
[ENA]
¡û
>W2310024424
BSNR01000001
Gammaproteobacteria
Dyella flava NBRC 111979 [BSNR]
172850
172926
+
Arg
TCT
[ENA]
¡û
>W2310024629
BSOA01000003
Gammaproteobacteria
Dyella flagellata NBRC 111981 [BSOA]
357377
357453
+
Arg
TCT
[ENA]
¡û
>W2310024703
BSOB01000061
Gammaproteobacteria
Dyella acidisoli NBRC 111980 [BSOB]
199252
199328
+
Arg
TCT
[ENA]
¡û
>W2310024739
BSOC01000002
Gammaproteobacteria
Dyella mobilis NBRC 111475 [BSOC]
939667
939743
+
Arg
TCT
[ENA]
¡û
>W1511305058
JPLA01000022
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
112363
112439
+
Arg
TCT
[ENA]
¡û
>W1511305111
JPLB01000053
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 [JPLB]
87024
86948
-
Arg
TCT
[ENA]
¡û
>W1511305281
JPLD01000306
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
5487
5563
+
Arg
TCT
[ENA]
¡û
>W1511433912
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
2770973
2770897
-
Arg
TCT
[ENA]
¡û
>W1511547557
JZRB01000003
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
132073
131997
-
Arg
TCT
[ENA]
¡û
>W1511686271
LFQR01000030
Gammaproteobacteria
Frateuria defendens Hyalesthes Obsoletus HyOG [LFQR]
84684
84760
+
Arg
TCT
[ENA]
¡û
>C121011591
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
1980748
1980672
-
Arg
TCT
[Ensembl]
¡û
>C161085655
CP015249
Gammaproteobacteria
Dokdonella koreensis DS-123 [CP015249]
2451695
2451619
-
Arg
TCT
[Ensembl]
¡û
>W121017563
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
719863
719939
+
Arg
TCT
[ENA]
¡û
>W121113877
ALOY01000118
Gammaproteobacteria
Dyella japonica A8 [ALOY]
12946
12870
-
Arg
TCT
[ENA]
¡û
>W1610616803
LGRQ01000789
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
406
330
-
Arg
TCT
[ENA]
¡û
>W1610662269
LJTI01000019
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_31 [LJTI]
43681
43757
+
Arg
TCT
[ENA]
¡û
>W1610742938
LMSL01000006
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
54248
54324
+
Arg
TCT
[ENA]
¡û
>W1710515255
FNBR01000001
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
513482
513558
+
Arg
TCT
[ENA]
¡û
>W1710541149
FNYC01000003
Gammaproteobacteria
Frateuria terrea [FNYC]
143071
143147
+
Arg
TCT
[ENA]
¡û
>W1710545804
FOBU01000002
Gammaproteobacteria
Luteibacter sp. UNCMF331Sha3.1 [FOBU]
841247
841323
+
Arg
TCT
[ENA]
¡û
>W1710548709
FODZ01000003
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
376302
376226
-
Arg
TCT
[ENA]
¡û
>W1710570524
FOVF01000001
Gammaproteobacteria
Dokdonella immobilis [FOVF]
123934
123858
-
Arg
TCT
[ENA]
¡û
>W1710573387
FOXL01000004
Gammaproteobacteria
Frateuria terrea [FOXL]
408349
408273
-
Arg
TCT
[ENA]
¡û
>W1710575664
FOZI01000003
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
108450
108526
+
Arg
TCT
[ENA]
¡û
>W1710579655
FPIS01000001
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
1147357
1147281
-
Arg
TCT
[ENA]
¡û
>W1710603049
FUYT01000005
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
228904
228828
-
Arg
TCT
[ENA]
¡û
>W1710742142
LGRQ01000789
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
406
330
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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