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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179131 (13 seq.)
>WENV180297538
OBJA01042522
[OBJA] soil metagenome; sediment, water from around vicinity
749
673
-
Ile
GAT
[ENA]
¢þ
>WENV181844227
OGVV01023934
[OGVV] freshwater metagenome; freshwater
477
401
-
Ile
GAT
[ENA]
¢þ
>WENV170111987
CEGC01000373
[CEGC] microbial mat metagenome; grass silage
3418
3342
-
Ile
GAT
[ENA]
¢þ
>WENV170112111
CEGD01000656
[CEGD] microbial mat metagenome; grass silage
1955
2031
+
Ile
GAT
[ENA]
¢þ
>WENV170772362
LXNI01027043
[LXNI] sponge metagenome; marine sponge reef
1502
1429
-
Ile
GAT
[ENA]
¢þ
>C181220390
LT703003
Alphaproteobacteria
Anderseniella sp. Alg231-50 [LT703003, LT703004, LT703005, LT703006, LT703007, LT703008, LT703009, LT703010]
1621491
1621567
+
Ile
GAT
-
¡û
>W1511564761
LAEA01000131
Alphaproteobacteria
Rhodospirillaceae bacterium BRH_c57 [LAEA]
2212
2288
+
Ile
GAT
[ENA]
¡û
>C161073344
CP014525
Alphaproteobacteria
Haematospirillum jordaniae H5569 [CP014525]
775996
776072
+
Ile
GAT
[Ensembl]
¡û
>C161073348
CP014525
Alphaproteobacteria
Haematospirillum jordaniae H5569 [CP014525]
990722
990798
+
Ile
GAT
[Ensembl]
¡û
>C161073356
CP014525
Alphaproteobacteria
Haematospirillum jordaniae H5569 [CP014525]
1460954
1461030
+
Ile
GAT
[Ensembl]
¡û
>C161073390
CP014525
Alphaproteobacteria
Haematospirillum jordaniae H5569 [CP014525]
237410
237334
-
Ile
GAT
[Ensembl]
¡û
>C161073396
CP014525
Alphaproteobacteria
Haematospirillum jordaniae H5569 [CP014525]
4132
4056
-
Ile
GAT
[Ensembl]
¡û
>W1710598532
FTOA01000018
Alphaproteobacteria
Insolitispirillum peregrinum [FTOA]
1757
1833
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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