This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179273 (35 seq.)
>C171002393
CP009471
Thermotogota
Marinitoga sp. 1137 [CP009471]
781949
782025
+
Met
CAT
-
¡û
>C171002419
CP009471
Thermotogota
Marinitoga sp. 1137 [CP009471]
887095
887019
-
Met
CAT
-
¡û
>W141732754
JNKI01000009
Bacillota
Selenomonas sp. ND2010 [JNKI]
102075
102151
+
Met
CAT
[ENA]
¡û
>W141732778
JNKI01000026
Bacillota
Selenomonas sp. ND2010 [JNKI]
12712
12636
-
Met
CAT
[ENA]
¡û
>W1911679730
QHLX01000001
Thermotogota
Marinitoga sp. LG1 [QHLX]
386161
386085
-
Met
CAT
[ENA]
¡û
>W1911679733
QHLX01000001
Thermotogota
Marinitoga sp. LG1 [QHLX]
384134
384058
-
Met
CAT
[ENA]
¡û
>W2010335262
CACYJN010000060
Bacillota
Selenomonas ruminantium [CACYJN]
596
520
-
Met
CAT
[ENA]
¡û
>W2010339784
CADACT010000078
Bacillota
Selenomonas ruminantium [CADACT]
6582
6506
-
Met
CAT
[ENA]
¡û
>W2010343957
CADBIG010000002
Bacillota
Selenomonas ruminantium [CADBIG]
412
336
-
Met
CAT
[ENA]
¡û
>W2010769656
LBFB01000026
Thermotogota
Marinitoga sp. 1154 [LBFB]
22
98
+
Met
CAT
[ENA]
¡û
>W2010769661
LBFB01000052
Thermotogota
Marinitoga sp. 1154 [LBFB]
2103
2027
-
Met
CAT
[ENA]
¡û
>W2010782742
LNGH01000007
Thermotogota
Marinitoga sp. 38H-ov [LNGH]
58162
58238
+
Met
CAT
[ENA]
¡û
>W2010782745
LNGH01000007
Thermotogota
Marinitoga sp. 38H-ov [LNGH]
60185
60261
+
Met
CAT
[ENA]
¡û
>W2011257010
QHLX01000001
Thermotogota
Marinitoga sp. LG1 [QHLX]
386161
386085
-
Met
CAT
[ENA]
¡û
>W2011257013
QHLX01000001
Thermotogota
Marinitoga sp. LG1 [QHLX]
384134
384058
-
Met
CAT
[ENA]
¡û
>W2012141355
VTOY01000003
Bacillota
Selenomonas sp. mPRGC5 [VTOY]
250261
250337
+
Met
CAT
[ENA]
¡û
>W2012141383
VTOY01000008
Bacillota
Selenomonas sp. mPRGC5 [VTOY]
16124
16048
-
Met
CAT
[ENA]
¡û
>W2012141451
VTOZ01000019
Bacillota
Selenomonas sp. mPRGC8 [VTOZ]
23727
23651
-
Met
CAT
[ENA]
¡û
>W2012141466
VTOZ01000041
Bacillota
Selenomonas sp. mPRGC8 [VTOZ]
171
95
-
Met
CAT
[ENA]
¡û
>W2110459959
JAFBDI010000024
Thermotogota
Marinitoga litoralis DSM 21709 [JAFBDI]
35679
35603
-
Met
CAT
[ENA]
¡û
>W2110459962
JAFBDI010000024
Thermotogota
Marinitoga litoralis DSM 21709 [JAFBDI]
33600
33524
-
Met
CAT
[ENA]
¡û
>C121009772
CP003257
Thermotogota
Marinitoga piezophila KA3 [CP003257]
718931
719007
+
Met
CAT
[Ensembl]
¡û
>C121009798
CP003257
Thermotogota
Marinitoga piezophila KA3 [CP003257]
825040
824964
-
Met
CAT
[Ensembl]
¡û
>W1610032653
AZAX01000033
Thermotogota
Marinitoga sp. 1155 [AZAX]
30825
30749
-
Met
CAT
[ENA]
¡û
>W1610032678
AZAY01000009
Thermotogota
Marinitoga sp. 1197 [AZAY]
55960
55884
-
Met
CAT
[ENA]
¡û
>W1710029398
AZAX01000033
Thermotogota
Marinitoga sp. 1155 [AZAX]
30825
30749
-
Met
CAT
[ENA]
¡û
>W1710029423
AZAY01000009
Thermotogota
Marinitoga sp. 1197 [AZAY]
55960
55884
-
Met
CAT
[ENA]
¡û
>W1710516293
FNCM01000004
Bacillota
Selenomonas ruminantium [FNCM]
242292
242368
+
Met
CAT
[ENA]
¡û
>W1710516329
FNCM01000022
Bacillota
Selenomonas ruminantium [FNCM]
6294
6370
+
Met
CAT
[ENA]
¡û
>W1710564312
FOQK01000014
Bacillota
Selenomonas ruminantium [FOQK]
57020
57096
+
Met
CAT
[ENA]
¡û
>W1710564354
FOQK01000036
Bacillota
Selenomonas ruminantium [FOQK]
26254
26330
+
Met
CAT
[ENA]
¡û
>W1710577566
FPAX01000009
Bacillota
Selenomonas ruminantium [FPAX]
94893
94969
+
Met
CAT
[ENA]
¡û
>W1710577602
FPAX01000027
Bacillota
Selenomonas ruminantium [FPAX]
14987
14911
-
Met
CAT
[ENA]
¡û
>W1710582889
FQUI01000023
Thermotogota
Marinitoga hydrogenitolerans DSM 16785 [FQUI]
112
36
-
Met
CAT
[ENA]
¡û
>W1710582896
FQUI01000032
Thermotogota
Marinitoga hydrogenitolerans DSM 16785 [FQUI]
27571
27495
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK