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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179297 (30 seq.)
>A171000267
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
1256617
1256690
+
Cys
GCA
-
¡û
>A171001557
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
228780
228707
-
Cys
GCA
-
¡û
>A171002512
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
1389661
1389588
-
Cys
GCA
-
¡û
>WENV180274876
OBHO01000536
[OBHO] metagenome; water
189
116
-
Cys
GCA
[ENA]
¢þ
>WENV180316952
OBKJ01002800
[OBKJ] metagenome; hydrothermal vent
84
11
-
Cys
GCA
[ENA]
¢þ
>WENV180332338
OBLD01000205
[OBLD] metagenome; water
5959
6032
+
Cys
GCA
[ENA]
¢þ
>WENV180581491
OCMK01000282
[OCMK] metagenome; diffuse fluid
1347
1420
+
Cys
GCA
[ENA]
¢þ
>WENV180582070
OCMO01000036
[OCMO] metagenome; diffuse fluid
5029
5102
+
Cys
GCA
[ENA]
¢þ
>WENV181206191
OFAT01000160
[OFAT] metagenome; hydrothermal vent
5386
5313
-
Cys
GCA
[ENA]
¢þ
>WENV181206598
OFAW01000407
[OFAW] metagenome; hydrothermal vent
921
848
-
Cys
GCA
[ENA]
¢þ
>WENV181207192
OFAY01003256
[OFAY] metagenome; hydrothermal vent
87
14
-
Cys
GCA
[ENA]
¢þ
>WENV181207455
OFAZ01000438
[OFAZ] metagenome; hydrothermal vent
4411
4338
-
Cys
GCA
[ENA]
¢þ
>WENV181207803
OFBA01000205
[OFBA] metagenome; hydrothermal vent
4209
4136
-
Cys
GCA
[ENA]
¢þ
>WENV181208181
OFBB01000238
[OFBB] metagenome; hydrothermal vent
1326
1399
+
Cys
GCA
[ENA]
¢þ
>WENV181208632
OFBC01000415
[OFBC] metagenome; hydrothermal vent
4493
4420
-
Cys
GCA
[ENA]
¢þ
>WENV181223770
OFDD01000180
[OFDD] metagenome; hydrothermal vent
3996
3923
-
Cys
GCA
[ENA]
¢þ
>WENV181224400
OFDF01000298
[OFDF] metagenome; hydrothermal vent
3187
3114
-
Cys
GCA
[ENA]
¢þ
>WENV181224630
OFDG01000301
[OFDG] metagenome; hydrothermal vent
4047
3974
-
Cys
GCA
[ENA]
¢þ
>WENV181225378
OFDI01000497
[OFDI] metagenome; hydrothermal vent
478
405
-
Cys
GCA
[ENA]
¢þ
>At1017
CP000743
Euryarchaeota
Methanococcus aeolicus Nankai-3 [CP000743]
1053103
1053176
+
Cys
GCA
[Ensembl]
¡û
>At1047
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
234698
234771
+
Cys
GCA
[Ensembl]
¡û
>At1105
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
573809
573736
-
Cys
GCA
[Ensembl]
¡û
>At1147
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
1305357
1305284
-
Cys
GCA
[Ensembl]
¡û
>At1181
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
685954
685881
-
Cys
GCA
[Ensembl]
¡û
>W1610000334
AAWI01000003
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
253251
253178
-
Cys
GCA
[ENA]
¡û
>W1610000358
AAWX01000001
Euryarchaeota
Methanococcus vannielii SB [AAWX]
422524
422451
-
Cys
GCA
[ENA]
¡û
>W1610000429
AAZL01000001
Euryarchaeota
Methanococcus aeolicus Nankai-3 [AAZL]
1388390
1388463
+
Cys
GCA
[ENA]
¡û
>W1610000455
AAZM01000001
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
414900
414973
+
Cys
GCA
[ENA]
¡û
>W1610000562
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
357389
357462
+
Cys
GCA
[ENA]
¡û
>W1610000601
ABHB01000001
Euryarchaeota
Methanococcus voltae A3 [ABHB]
1258308
1258235
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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