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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179314 (17 seq.)
>A171000684
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
370983
371059
+
Thr
TGT
-
¡û
>A171002600
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
760637
760561
-
Thr
TGT
-
¡û
>A171003902
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
480935
480859
-
Thr
TGT
-
¡û
>A171006345
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
282230
282306
+
Thr
TGT
-
¡û
>A171006591
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1529345
1529421
+
Thr
TGT
-
¡û
>WENV170675986
LDZQ01001625
[LDZQ] terrestrial metagenome; oil reservoir sample I2
4280
4204
-
Thr
TGT
[ENA]
¢þ
>WENV170676312
LDZR01002238
[LDZR] terrestrial metagenome; oil reservoir sample K2
13
89
+
Thr
TGT
[ENA]
¢þ
>WENV170676719
LDZS01002036
[LDZS] terrestrial metagenome; oil reservoir sample K3
8907
8983
+
Thr
TGT
[ENA]
¢þ
>W1910200323
FJMQ01000103
Euryarchaeota
Thermococcus litoralis [FJMQ]
28642
28566
-
Thr
TGT
[ENA]
¡û
>W1910597267
LANF01000009
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
180842
180766
-
Thr
TGT
[ENA]
¡û
>W1610004924
AHVB01000044
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
22152
22076
-
Thr
TGT
[ENA]
¡û
>W1610005562
AKID01000006
Euryarchaeota
Thermococcus sp. PK [AKID]
19737
19661
-
Thr
TGT
[ENA]
¡û
>W1610548877
JXCG01000004
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
125820
125744
-
Thr
TGT
[ENA]
¡û
>W1610612448
LGET01000084
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
4280
4204
-
Thr
TGT
[ENA]
¡û
>W1610612817
LGFD01000017
Euryarchaeota
Thermococcus sibiricus [LGFD]
13
89
+
Thr
TGT
[ENA]
¡û
>W1610613031
LGFJ01000007
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
8907
8983
+
Thr
TGT
[ENA]
¡û
>W1610717945
LLYW01000050
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
201
277
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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