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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179352 (65 seq.)
>W1711183503
LWLB01000032
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
254105
254029
-
Val
GAC
[ENA]
¡û
>W1711183506
LWLB01000032
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
151156
151080
-
Val
GAC
[ENA]
¡û
>W1711492073
MKKC01000067
Actinomycetota
Nocardiopsis sp. CNR-923 [MKKC]
83013
83089
+
Val
GAC
[ENA]
¡û
>W1711492102
MKKC01000131
Actinomycetota
Nocardiopsis sp. CNR-923 [MKKC]
19012
19088
+
Val
GAC
[ENA]
¡û
>C171070729
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
4674366
4674440
+
Val
GAC
-
¡û
>C171070756
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
2197730
2197654
-
Val
GAC
-
¡û
>W131053533
ANAD01000119
Actinomycetota
Nocardiopsis halophila DSM 44494 [ANAD]
4029
3953
-
Val
GAC
[ENA]
¡û
>W131053561
ANAD01000205
Actinomycetota
Nocardiopsis halophila DSM 44494 [ANAD]
25626
25550
-
Val
GAC
[ENA]
¡û
>W131054320
ANAS01000042
Actinomycetota
Nocardiopsis baichengensis YIM 90130 [ANAS]
1069
993
-
Val
GAC
[ENA]
¡û
>W131054324
ANAS01000044
Actinomycetota
Nocardiopsis baichengensis YIM 90130 [ANAS]
37953
38029
+
Val
GAC
[ENA]
¡û
>W131054608
ANAW01000192
Actinomycetota
Nocardiopsis synnemataformans DSM 44143 [ANAW]
13305
13381
+
Val
GAC
[ENA]
¡û
>W131054648
ANAX01000240
Actinomycetota
Nocardiopsis halotolerans DSM 44410 [ANAX]
11988
11912
-
Val
GAC
[ENA]
¡û
>W131054657
ANAX01000325
Actinomycetota
Nocardiopsis halotolerans DSM 44410 [ANAX]
11574
11650
+
Val
GAC
[ENA]
¡û
>W131054697
ANAY01000015
Actinomycetota
Nocardiopsis kunsanensis DSM 44524 [ANAY]
57684
57760
+
Val
GAC
[ENA]
¡û
>W131054700
ANAY01000015
Actinomycetota
Nocardiopsis kunsanensis DSM 44524 [ANAY]
135693
135769
+
Val
GAC
[ENA]
¡û
>W131054842
ANBB01000001
Actinomycetota
Nocardiopsis potens DSM 45234 [ANBB]
29213
29137
-
Val
GAC
[ENA]
¡û
>W131054865
ANBB01000044
Actinomycetota
Nocardiopsis potens DSM 45234 [ANBB]
31713
31789
+
Val
GAC
[ENA]
¡û
>W131054909
ANBC01000205
Actinomycetota
Nocardiopsis lucentensis DSM 44048 [ANBC]
1993
1917
-
Val
GAC
[ENA]
¡û
>W131054918
ANBC01000207
Actinomycetota
Nocardiopsis lucentensis DSM 44048 [ANBC]
8507
8433
-
Val
GAC
[ENA]
¡û
>W131055031
ANBE01000017
Actinomycetota
Nocardiopsis xinjiangensis YIM 90004 [ANBE]
83842
83766
-
Val
GAC
[ENA]
¡û
>W131055036
ANBE01000018
Actinomycetota
Nocardiopsis xinjiangensis YIM 90004 [ANBE]
28036
27960
-
Val
GAC
[ENA]
¡û
>W131055109
ANBF01000169
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
99891
99815
-
Val
GAC
[ENA]
¡û
>W131055112
ANBF01000169
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
31405
31329
-
Val
GAC
[ENA]
¡û
>W131055137
ANBG01000064
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
15800
15876
+
Val
GAC
[ENA]
¡û
>W131055198
ANBH01000118
Actinomycetota
Nocardiopsis chromatogenes YIM 90109 [ANBH]
9033
8959
-
Val
GAC
[ENA]
¡û
>W131055226
ANBH01000322
Actinomycetota
Nocardiopsis chromatogenes YIM 90109 [ANBH]
38703
38779
+
Val
GAC
[ENA]
¡û
>W131179358
ARMI01000041
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
110958
111034
+
Val
GAC
[ENA]
¡û
>W131179373
ARMI01000049
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
154090
154016
-
Val
GAC
[ENA]
¡û
>WENV180354678
OBNE01002839
[OBNE] groundwater metagenome; groundwater
186
112
-
Val
GAC
[ENA]
¢þ
>WENV180355681
OBNI01020103
[OBNI] sediment metagenome; sediment
232
158
-
Val
GAC
[ENA]
¢þ
>W141219668
AZXF01000006
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
126686
126760
+
Val
GAC
[ENA]
¡û
>W141219671
AZXF01000006
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
138078
138152
+
Val
GAC
[ENA]
¡û
>WENV183676507
ORJL011632737
[ORJL] groundwater metagenome; groundwater
10037
10111
+
Val
GAC
[ENA]
¢þ
>WENV183690052
ORMF011539485
[ORMF] groundwater metagenome; groundwater
2421
2347
-
Val
GAC
[ENA]
¢þ
>W09109579
ABUI01000032
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [ABUI]
54821
54897
+
Val
GAC
[ENA]
¡û
>W09109585
ABUI01000051
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [ABUI]
17660
17586
-
Val
GAC
[ENA]
¡û
>C181064857
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
4760080
4760154
+
Val
GAC
-
¡û
>C181064883
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
2175205
2175129
-
Val
GAC
-
¡û
>C181072237
CP022753
Actinomycetota
Nocardiopsis gilva YIM 90087 [CP022753]
2323066
2322990
-
Val
GAC
-
¡û
>C191151531
CP036455
Actinomycetota
Streptomonospora litoralis M2 [CP036455]
3548177
3548253
+
Val
GAC
-
¡û
>C191151562
CP036455
Actinomycetota
Streptomonospora litoralis M2 [CP036455]
2127247
2127171
-
Val
GAC
-
¡û
>C191212876
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
2272042
2272116
+
Val
GAC
-
¡û
>C191212904
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
6267541
6267465
-
Val
GAC
-
¡û
>W1911709912
QPNC01000006
Actinomycetota
Nocardiopsis sp. FIRDI 009 [QPNC]
256276
256352
+
Val
GAC
[ENA]
¡û
>W1911709915
QPNC01000006
Actinomycetota
Nocardiopsis sp. FIRDI 009 [QPNC]
283581
283657
+
Val
GAC
[ENA]
¡û
>W1810046831
NYMS01000010
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
125639
125563
-
Val
GAC
[ENA]
¡û
>W1810046879
NYMS01000062
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
158698
158622
-
Val
GAC
[ENA]
¡û
>C10109682
CP002040
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [CP002040, CP002041]
3909794
3909868
+
Val
GAC
[Ensembl]
¡û
>C10109709
CP002040
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [CP002040, CP002041]
1364142
1364066
-
Val
GAC
[Ensembl]
¡û
>W1511352731
JROO01000005
Actinomycetota
Streptomonospora alba YIM 90003 [JROO]
17248
17324
+
Val
GAC
[ENA]
¡û
>W1511352772
JROO01000043
Actinomycetota
Streptomonospora alba YIM 90003 [JROO]
47917
47993
+
Val
GAC
[ENA]
¡û
>W1511656811
LEKI01000044
Actinomycetota
Nocardiopsis sp. RV163 [LEKI]
9734
9660
-
Val
GAC
[ENA]
¡û
>W1511656823
LEKI01000098
Actinomycetota
Nocardiopsis sp. RV163 [LEKI]
2339
2263
-
Val
GAC
[ENA]
¡û
>W1610068514
BCRK01000011
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
19996
20072
+
Val
GAC
[ENA]
¡û
>W1610068548
BCRK01000109
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
13822
13746
-
Val
GAC
[ENA]
¡û
>W1610068897
BCRR01000010
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
141014
140938
-
Val
GAC
[ENA]
¡û
>W1610068934
BCRR01000113
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
9494
9570
+
Val
GAC
[ENA]
¡û
>W1710065887
BCRK01000011
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
19996
20072
+
Val
GAC
[ENA]
¡û
>W1710065921
BCRK01000109
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
13822
13746
-
Val
GAC
[ENA]
¡û
>W1710066270
BCRR01000010
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
141014
140938
-
Val
GAC
[ENA]
¡û
>W1710066307
BCRR01000113
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
9494
9570
+
Val
GAC
[ENA]
¡û
>W1710588505
FQZK01000010
Actinomycetota
Nocardiopsis flavescens [FQZK]
23625
23701
+
Val
GAC
[ENA]
¡û
>W1710588508
FQZK01000010
Actinomycetota
Nocardiopsis flavescens [FQZK]
67973
68049
+
Val
GAC
[ENA]
¡û
>W1710600720
FUWS01000010
Actinomycetota
Marinactinospora thermotolerans DSM 45154 [FUWS]
73818
73894
+
Val
GAC
[ENA]
¡û
>W1710600723
FUWS01000010
Actinomycetota
Marinactinospora thermotolerans DSM 45154 [FUWS]
107440
107516
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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