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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179380 (69 seq.)
>W1711115595
LUAH01000088
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
134362
134436
+
Pro
GGG
[ENA]
¡û
>W1711503551
MKTS01000003
Bacteroidota
Mucilaginibacter sp. 44-25 [MKTS]
354808
354882
+
Pro
GGG
[ENA]
¡û
>W1711506303
MKWH01000023
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
72964
73038
+
Pro
GGG
[ENA]
¡û
>W1711712797
MTCM01000007
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
118155
118229
+
Pro
GGG
[ENA]
¡û
>C171089545
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
2172042
2171966
-
Pro
GGG
-
¡û
>C171118495
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
1670387
1670313
-
Pro
GGG
-
¡û
>W131205423
ATDL01000006
Bacteroidota
Sphingobacterium paucimobilis 1398 [ATDL]
19759
19833
+
Pro
GGG
[ENA]
¡û
>W131220016
ATZA01000010
Bacteroidota
Olivibacter sitiensis DSM 17696 [ATZA]
84145
84219
+
Pro
GGG
[ENA]
¡û
>W141151930
AXBK01000005
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
464042
463966
-
Pro
GGG
[ENA]
¡û
>WENV183726558
PJTO01000009
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
124662
124736
+
Pro
GGG
[ENA]
¢þ
>WENV183726695
PJTO01000073
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
89918
89844
-
Pro
GGG
[ENA]
¢þ
>WENV183727642
PJTP01000056
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
74643
74569
-
Pro
GGG
[ENA]
¢þ
>WENV183728506
PJTQ01000093
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
89918
89844
-
Pro
GGG
[ENA]
¢þ
>WENV183728632
PJTQ01000204
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
50824
50898
+
Pro
GGG
[ENA]
¢þ
>WENV183729608
PJTQ01088805
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
80
6
-
Pro
GGG
[ENA]
¢þ
>WENV183729957
PJTR01000239
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
562
488
-
Pro
GGG
[ENA]
¢þ
>WENV183730710
PJTS01000379
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
11631
11557
-
Pro
GGG
[ENA]
¢þ
>WENV183731000
PJTS01003585
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
2744
2818
+
Pro
GGG
[ENA]
¢þ
>WENV183732305
PJTX01000004
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
80103
80177
+
Pro
GGG
[ENA]
¢þ
>WENV183732433
PJTX01000239
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
9132
9058
-
Pro
GGG
[ENA]
¢þ
>WENV183732995
PJTY01000014
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
140728
140802
+
Pro
GGG
[ENA]
¢þ
>WENV183734004
PJTZ01000017
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
161410
161336
-
Pro
GGG
[ENA]
¢þ
>WENV183734167
PJTZ01000120
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
55586
55660
+
Pro
GGG
[ENA]
¢þ
>WENV183734871
PJUA01000071
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
63610
63684
+
Pro
GGG
[ENA]
¢þ
>WENV183735570
PJUB01000053
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
69904
69978
+
Pro
GGG
[ENA]
¢þ
>WENV183735712
PJUB01000789
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
2997
3071
+
Pro
GGG
[ENA]
¢þ
>WENV183736539
PJUC01010404
[PJUC] soil metagenome; Soil enriched on filter paper
197
271
+
Pro
GGG
[ENA]
¢þ
>WENV183736629
PJUC01026972
[PJUC] soil metagenome; Soil enriched on filter paper
339
413
+
Pro
GGG
[ENA]
¢þ
>WENV183736736
PJUD01000006
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
147932
148006
+
Pro
GGG
[ENA]
¢þ
>WENV183736757
PJUD01000015
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
130380
130456
+
Pro
GGG
[ENA]
¢þ
>WENV183736806
PJUD01000037
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
21411
21485
+
Pro
GGG
[ENA]
¢þ
>WENV183738533
PJUE01000012
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
134718
134792
+
Pro
GGG
[ENA]
¢þ
>WENV183738611
PJUE01000040
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
21411
21485
+
Pro
GGG
[ENA]
¢þ
>WENV183738810
PJUE01000241
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
42311
42235
-
Pro
GGG
[ENA]
¢þ
>WENV183739892
PJUF01000046
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
89918
89844
-
Pro
GGG
[ENA]
¢þ
>WENV183740161
PJUF01000517
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4892
4818
-
Pro
GGG
[ENA]
¢þ
>WENV183740497
PJUF01002763
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4113
4039
-
Pro
GGG
[ENA]
¢þ
>WENV183740742
PJUF01008535
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
881
805
-
Pro
GGG
[ENA]
¢þ
>WENV183741386
PJUG01000001
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
121917
121991
+
Pro
GGG
[ENA]
¢þ
>WENV183741902
PJUH01000004
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
121761
121835
+
Pro
GGG
[ENA]
¢þ
>WENV183742535
PJUI01000009
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
121761
121835
+
Pro
GGG
[ENA]
¢þ
>WENV183742976
PJUJ01000003
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
121917
121991
+
Pro
GGG
[ENA]
¢þ
>WENV183743815
PJUK01000004
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
121917
121991
+
Pro
GGG
[ENA]
¢þ
>WENV170001641
AGFS01114224
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
84
158
+
Pro
GGG
[ENA]
¢þ
>WENV170996954
MWWG01009712
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
376
452
+
Pro
GGG
[ENA]
¢þ
>WENV170998120
MWWI01018897
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
336
412
+
Pro
GGG
[ENA]
¢þ
>C191222328
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
3512342
3512268
-
Pro
GGG
-
¡û
>W09123590
ACHA01000108
Bacteroidota
Sphingobacterium spiritivorum ATCC 33861 [ACHA]
65350
65276
-
Pro
GGG
[ENA]
¡û
>W09123609
ACHB01000021
Bacteroidota
Sphingobacterium spiritivorum ATCC 33300 [ACHB]
41393
41467
+
Pro
GGG
[ENA]
¡û
>W141701958
JMLD01000010
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
167955
167881
-
Pro
GGG
[ENA]
¡û
>W1910664407
MCAQ01000030
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
123082
123156
+
Pro
GGG
[ENA]
¡û
>W1911219785
NRSW01000001
Bacteroidota
Mucilaginibacter sp. MD40 [NRSW]
958306
958380
+
Pro
GGG
[ENA]
¡û
>W1911747195
QWDC01000002
Bacteroidota
Mucilaginibacter conchicola MYSH2 [QWDC]
991709
991783
+
Pro
GGG
[ENA]
¡û
>W1810002577
BEYR01000007
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
216270
216196
-
Pro
GGG
[ENA]
¡û
>W1810090302
PGFJ01000001
Bacteroidota
Mucilaginibacter auburnensis DSM 28175 [PGFJ]
708526
708452
-
Pro
GGG
[ENA]
¡û
>W1810265811
PQVF01000005
Bacteroidota
Solitalea longa HR-AV [PQVF]
311376
311302
-
Pro
GGG
[ENA]
¡û
>W1810531936
QCXX01000006
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
249144
249070
-
Pro
GGG
[ENA]
¡û
>W1810594612
QGDC01000003
Bacteroidota
Mucilaginibacter hurinus ZR32 [QGDC]
482807
482733
-
Pro
GGG
[ENA]
¡û
>W1810789236
QRGB01000001
Bacteroidota
Pedobacter indicus SM1810 [QRGB]
3150519
3150593
+
Pro
GGG
[ENA]
¡û
>W1810917788
QWDE01000002
Bacteroidota
Mucilaginibacter terrenus ZH6 [QWDE]
178653
178727
+
Pro
GGG
[ENA]
¡û
>WENV11101713
AGFS01114224
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
84
158
+
Pro
GGG
[ENA]
¡û
>W1511108333
JJMU01000054
Bacteroidota
Sphingobacterium deserti ACCC 05744 [JJMU]
117432
117358
-
Pro
GGG
[ENA]
¡û
>W1511352488
JROE01000006
Bacteroidota
Sphingobacteriaceae bacterium DW12 [JROE]
321198
321122
-
Pro
GGG
[ENA]
¡û
>C11121240
CP002584
Bacteroidota
Sphingobacterium sp. 21 [CP002584]
1609834
1609760
-
Pro
GGG
[Ensembl]
¡û
>W1511590282
LBGU01000040
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
36388
36462
+
Pro
GGG
[ENA]
¡û
>C121011512
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
4482315
4482239
-
Pro
GGG
[Ensembl]
¡û
>W121017858
AGSC01000044
Bacteroidota
Solitalea canadensis DSM 3403 [AGSC]
362009
361933
-
Pro
GGG
[ENA]
¡û
>W1710543693
FOAF01000003
Bacteroidota
Olivibacter domesticus domesticum [FOAF]
180666
180742
+
Pro
GGG
[ENA]
¡û
>W1710603643
FUZF01000009
Bacteroidota
Sphingobacterium nematocida [FUZF]
120940
121014
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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